#16s

Ecology & Evolution of HealthEcoEvoHealth
2025-03-12

đź“° Happy to announce the publication in @PeerCommunityJournal of our analysis of dynamics.

🦠 This work provides unprecedented insights into the occurrence of .

Thanks to the participating in the study at CHU Montpellier (France) 🙏

The model (all in ) was built by @tsukushi_kamiya and the sequencing of over 2.000 samples was done in Jacques Ravel's lab. This work stems from the @ERC_Research project.

peercommunityjournal.org/artic

2025-03-12

Heureux d'annoncer la publication dans @PeerCommunityJournal de notre analyse de la dynamique du #MicrobioteVaginal.

Ces travaux sont issus de l'étude #PAPCLEAR promue par le #CHU_Montpellier et financée par l' @ERC_Research, qui représente l'un des suivis les plus longs à ce jour.

Le magnifique modèle statistique (tout en #RStan) a été réalisé par @tsukushi_kamiya et le séquençage #16S de plus de 2000 échantillons réalisé dans le laboratoire de Jacques Ravel.

peercommunityjournal.org/artic

2024-08-05

Pipeline release! nf-core/ampliseq v2.11.0 - Ampliseq Version 2.11.0!

Please see the changelog: github.com/nf-core/ampliseq/re

#16s #18s #amplicon-sequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomic-classification #taxonomic-profiling #nfcore #openscience #nextflow #bioinformatics

2024-06-27

Pipeline release! nf-core/ampliseq v2.10.0 - Ampliseq Version 2.10.0!

Please see the changelog: github.com/nf-core/ampliseq/re

#16s #18s #amplicon-sequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomic-classification #taxonomic-profiling #nfcore #openscience #nextflow #bioinformatics

2024-04-03

Pipeline release! nf-core/ampliseq v2.9.0 - Ampliseq Version 2.9.0!

Please see the changelog: github.com/nf-core/ampliseq/re

#16s #18s #amplicon-sequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomic-classification #taxonomic-profiling #nfcore #openscience #nextflow #bioinformatics

2024-02-19

Tropical Cyclone #16S has developed in the South Indian Ocean.

See the latest forecast here: zoom.earth/storms/16s-2024/

Scouting The Refs 🤖ScoutingTheRefs@sportsbots.xyz
2024-02-03

Oh, now we've got two #9s and two #16s on the same team. Even the guys saying "C'mon, we know who's out there" are going to get mixed up...

Anders Lanzénlanzen@fediscience.org
2023-11-17

Happy to have contributed, w Thorsten Stoeck,
@ionferrico and others, to this paper by Leontidou et al where we describe our results from trying out a new type of commercial assay for #metabarcoding #microbial communities of several #16S hypervariable regions at once. Do check it out.

#MicrobialEcology #Molecular #Methods

ami-journals.onlinelibrary.wil

Teresita Porter 🙋🏻‍♀️DNAdataPhile@ecoevo.social
2023-11-09

On the limits of 16S rRNA gene-based metagenome prediction and functional profiling

"16S rRNA gene-based functional inference tools generally do not have the necessary sensitivity to delineate health-related functional changes in the microbiome and should thus be used with care"

biorxiv.org/content/10.1101/20

#metabarcoding #16S #rRNA #CopyNumber #bias #FunctionalInference #prediction

Teresita Porter 🙋🏻‍♀️DNAdataPhile@ecoevo.social
2023-10-23

**Greengenes2 unifies microbial data in a single reference tree**

nature.com/articles/s41587-023

#16S #rRNAgene #metagenomics #microbes

Teresita Porter 🙋🏻‍♀️DNAdataPhile@ecoevo.social
2023-06-27

VertU: universal multilocus primer sets for eDNA metabarcoding of vertebrate diversity, evaluated by both artificial and natural cases

frontiersin.org/articles/10.33

#metabarcoding #vertebrate #primers #universal #16S #12S #COI

Teresita Porter 🙋🏻‍♀️DNAdataPhile@ecoevo.social
2023-06-17

Does phylogeny explain bias in quantitative DNA metabarcoding?
mbmg.pensoft.net/article/10126
#metabarcoding #phylogeny #quantification #16S #COI

Teresita Porter 🙋🏻‍♀️DNAdataPhile@ecoevo.social
2023-06-14

"**Accounting for 16S rRNA copy number prediction uncertainty and its implications in bacterial diversity analyses"**
#16S #metabarcoding #MarkerGeneSequencing #CopyNumber #Diversity #MicrobialDiversity #Bacteria #GeneCopyNumber
nature.com/articles/s43705-023

Teresita Porter 🙋🏻‍♀️DNAdataPhile@ecoevo.social
2023-04-19

"A comparison between Greengenes, SILVA, RDP, and NCBI reference databases in four published microbiota datasets"

biorxiv.org/content/10.1101/20

#16S #metabarcoding #MarkerGeneSequencing #SequenceDatabase #db #Greengenes #SILVA #RDP #NCBI #microbiome

2022-12-06

Pack your bags folks, it's decided. /s #chatgpt3 #16S #metagenomics

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