#Bioinformatics

2025-07-11

πŸ’»πŸ§¬ Join the Bioconductor project at BioHackathon Europe 2025!

We're excited to be part of BioHackathon Europe 2025 (Berlin, Nov 3–7) with a project focused on improving metadata and interoperability in bioinformatics.

In-person registration closes Tuesday, July 15 - virtual participation stays open!

πŸ”— Project details: github.com/elixir-europe/bioha
πŸ”— All projects: biohackathon-europe.org/projec

Join the discussion in the #edam-collaboration channel on Bioconductor Zulip.

#Bioconductor #Bioinformatics

Genetics Ecology and EvolutionGenEcoEvo@ecoevo.social
2025-07-11
2025-07-11

Join the Bioconductor Developer Forum - R & Rust in Bioinformatics

Curious about combining R and Rust in your bioinformatics workflows?

On 28 July, join us for an online session featuring talks on extendr, Rust-based package development, and real-world use cases in Bioconductor and CRAN.

πŸ—“οΈ Date: Monday, 28 July 2025
πŸ•” Time: 17:00–18:00 CEST
πŸ“ Location: Online
πŸ”— Read the blog post blog.bioconductor.org/posts/20

#Bioconductor #RStats #RustLang #Bioinformatics #OpenSource

Adam H. Sparks :rstats:adamhsparks@rstats.me
2025-07-11

{targets} getting a shoutout in @kgagalova’s talk, even though the focus is on #nextflow #RStats #ReproducibleResearch #Bioinformatics #targets. #Pipelines

Adam H. Sparks :rstats:adamhsparks@rstats.me
2025-07-11

Enjoying @kgagalova presenting her ideas for #bioinformatics pipelines and how workflow managers can make your scientific work into #ReproducibleResearch

2025-07-10

Pipeline release! nf-core/pairgenomealign v2.2.0 - nf-core/pairgenomealign v2.2.0 – Chagara ponzu!

Please see the changelog: github.com/nf-core/pairgenomea

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pierre Lindenbaumyokofakun@genomic.social
2025-07-10

UCSC genome browser: "Unusually Conserved Regions - Ultracons, HARs, etc" genome.ucsc.edu/cgi-bin/hgTrac

#ucsc #bioinformatics

Amici Is Me πŸ‡΅πŸ‡Έ πŸ‡ΊπŸ‡¦ πŸ‡³πŸ‡΄amici@fribygda.no
2025-07-10

The problem is always more complicated, always more nuanced, the second time you look at your #bioinformatics code, and realize an eventuality is unaccounted for

Victoria Stuart πŸ‡¨πŸ‡¦ πŸ³οΈβ€βš§οΈpersagen
2025-07-10

GREmLN: A Cellular Regulatory Network-Aware Transcriptomics Foundation Model
biorxiv.org/content/10.1101/20

Comments
* really brilliant work: LLM + neural transformer architecture
* a molecular biologist, I long-thought (no time to learn / program) flux-based analysis / ODE models
* this type of modeling is foundational to in silico modeling
* huge proponent of graphs - add LLM, attention heads - brilliant! πŸ˜€ πŸ‘οΈ kudos

GREmLN: A Cellular Regulatory Network-Aware Transcriptomics Foundation Model
https://www.biorxiv.org/content/10.1101/2025.07.03.663009v1?rss=1

Comments
* really brilliant work: LLM + neural transformer architecture
* a molecular biologist, I long-thought (no time to learn / program) flux-based analysis / ODE models
* this type of modeling is foundational to in silico modeling
* huge proponent of graphs - add LLM, attention heads - brilliant! πŸ˜€ πŸ‘οΈ kudos
Center for Health Data Scienceheads@datasci.social
2025-07-09

πŸ“£ PhD students in #health, #bioinformatics, or #DataScience: this one’s for you!

Join us at Health Data Science Day 2025 on 6 November at the University of Copenhagen for a full day of:
πŸ” Cutting-edge talks
🎀 Lightning talks from early-career researchers
πŸ“Š Poster sessions
🀝 Networking across disciplines

A great chance to share your workβ€”or get inspired for what’s next.

❗ Deadline is 1st of October
πŸ—“οΈ Register now: lnkd.in/dPGxC4bq

#PhDLife #HealthDataScience #UCPH

2025-07-09

⏰ Reminder: EuroBioC2025 late-breaking poster submissions close this Friday, July 11!

Submit your abstract to present your work in Barcelona, Sept 17–19:
πŸ”— forms.gle/ewTGdKzB2xyEg58f8

Don’t miss your chance to be part of #EuroBioC2025!

#Bioinformatics #RStats #Bioconductor

Melbourne BioinformaticsMelBioInf@genomic.social
2025-07-09

How would you like to apply your passion for #bioinformatics to a real-world research problem?

We co-supervise PhD students in a wide variety of research groups across the University of Melbourne and the Melbourne Biomedical precinct, from oncology to gynaecology to neuroscience.

If you're interested doing a PhD with Melbourne Bioinformatics, get in touch!
mdhs.unimelb.edu.au/melbourneb

2025-07-09

Looking for Bioinformatics people to ask about careers and about some of my own sequencing information which I have acquired (accomplished R programmer) #bioinformatics

2025-07-08

Stuck on an error message? Just drop it into chatGPT or Claude, and watch the magic unfold.

What a world to live in for learning.
No more excuses. #bioinformatics

Open CravatOpenCravat
2025-07-07

Would you be interested in organizing or speaking at meetups, writing blog posts, or promoting the project?
Are you part of any communities or organizations where you could share our project?

Open CravatOpenCravat
2025-07-07

Can you help test new features or provide feedback on pre-release versions?
Would you be interested in setting up automated test cases or improving test coverage?
Would you be open to helping improve documentation or writing user guides?
Do you have skills in UI/UX design, and would you be interested in helping us improve the user interface?

Open CravatOpenCravat
2025-07-07

We are seeking community members interested in taking part in OpenCRAVAT's future.
Let us know if you might contribute in any of these areas:
Would you be interested in contributing code, bug fixes, or performance improvements?
Are there features or issues you’d like to help implement or debug?
Would you be willing to review pull requests or help triage GitHub issues?πŸ–₯️ 🧬 πŸ§ͺ

2025-07-07

Structural motif search across the protein-universe with Folddisco

biorxiv.org/content/10.1101/20

I was just wondering the other day if there was already a tool to do this :) @martinsteinegger

@bioinformatics @strucbio #Bioinformatics

2025-07-07

Just found genomicsclass.github.io/book/ by Rafael Irizarry and Michael Love and what a find! If you analyse genomic/transcriptomic data, that book has got you covered! #bioinformatics

Client Info

Server: https://mastodon.social
Version: 2025.04
Repository: https://github.com/cyevgeniy/lmst