My analysis is kinda wonky.

Tutorial figure on the left, the output from my simulations on the right. It might be that I have made a mistake somewhere...

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Hi, #compchem people!

I would like to do some Markov state analysis for my MD simulations. What are the software tools people use for this these days? I used to use HTMD or PyEmma, but neither of these has been updated in years and they are a bit difficult to get going... Any ideas?

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