🧬 Can we map the evolutionary history of plant genes through network analysis?
🔗 Hayai-Annotation: A functional gene prediction tool that integrates orthologs and gene ontology for network analysis in plant species. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2024.12.011
📚 CSBJ: https://www.csbj.org/
#PlantGenomics #GeneAnnotation #Bioinformatics #Orthologs #RShiny #GeneOntology #ComparativeGenomics #NetworkBiology #Genetics
5k subscriber channel update: #deeplearning, #networkbiology, and live streams
https://youtube.com/shorts/y1jcyg5gbi4?feature=share
Many tissue- or disease-specific protein interaction networks have been published. But are they really "specific"? Or are they just filtered versions of non-specific networks? #bioinformatics #networkbiology https://youtube.com/shorts/x9LIxVNymcA?feature=share
STRING FAQ: Does distance mean anything? Have you ever looked at a STRING network and wonder if it means anything that two proteins are close to each other in the layout? #bioinformatics #networkbiology #networkvisualization https://youtube.com/shorts/F3Nrqjxlw4A?feature=share
An interesting paper.
Earlier, numerical approach with random sampling from parameter space had been used to study all sorts of adaptive network motifs.
But this paper uses a different analytical approach.
Design principles for perfect adaptation in biological networks with nonlinear dynamics | bioRxiv
https://www.biorxiv.org/content/10.1101/2022.12.05.519118v1
#introduction:
We are a new cell systems biology team at the #UniversityOfManchester #UoM.
We study #CellAdhesion #networks in health and disease, especially #cancer.
Fascinated by how adhesion proteins help #cells function in so many ways!
#proteomics #integrins #adhesion #cytoskeleton #nucleus #bioinformatics #omics #ExtracellularMatrix #ECM #NetworkBiology #DataViz
