I've refactor the #nextflow plugins stats site and now it's under IncSteps domain.

It has not only a new look&feel but also ... you can comment on it (using github discussion integration)!!!!

https://incsteps.github.io/nf-plugins-stats/)

Pipeline release! nf-core/createtaxdb v1.0.0 - v1.0 - Helpful Hydra - [2025-06-19]!

Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/1.0.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/metatdenovo v1.2.0 - nf-core/metatdenovo 1.2.0!

Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.2.0

#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/bamtofastq v2.2.0 - 2.2.0 - Kathleen Booth!

Please see the changelog: https://github.com/nf-core/bamtofastq/releases/tag/2.2.0

#bamtofastq #conversion #cramtofastq #nfcore #openscience #nextflow #bioinformatics

Exciting update! 🎉 We've fully re-engineered the #nextflow plugin stats site!

It's now hosted at

https://incsteps.github.io/nf-plugins-stats

and features a significantly improved user experience, including enhanced readability, full-text search, and a view of the top 10 most downloaded releases per plugin.

Pipeline release! nf-core/proteinfamilies v1.2.0 - Aluminium Frog!

Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.2.0

#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/rnaseq v3.19.0 - nf-core/rnaseq v3.19.0 - Tungsten Turtle!

Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.19.0

#rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/airrflow v4.3.1 - v4.3.1 Revelio bugfix!

Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/4.3.1

#airr #bcell #immcantation #immunorepertoire #repseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.0 - nf-core/scnanoseq v1.2.0 - Copper Rhinoceros!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Before I continue uploading - and I do have a couple of more contributions to add to the #ResearchEquals collection - first another contribution by Johanna Elena Schmitz and Jens Zentgraf made at the #SnakemakeHackathon2025

One difficulty when dealing with a different scientific question: Do I need to re-invent the wheel (read: write a Workflow from scratch?) just to address my slightly different question?

Snakemake already allowed to incorporate "alien" workflows, even #Nextflow workflows, into desired workflows. The new contribution allows for a more dynamic contribution - with very little changes.

Check it out: https://zenodo.org/records/15489694

#Snakemake #ReproducibleComputing #OpenScience

still an rearly release candidate but nf-cachebrowser has been downloaded 18 times !!! and it remains most interesting features to be included

#nextflow

https://edn-es.github.io/nf-plugins-stats/docs/nf-cachebrowser/

Since we can't use the cloud to automate our #EHR analysis projects , we tried #nextflow (traditionally used in bioinformatics https://www.nextflow.io/), and it worked as a charm coordinating #duckdb #R #python and within node tasks.
Next in line is (R)?ex https://www.rexify.org/

Since we can't use the cloud to automate our #EHR analysis projects , we tried #nextflow (traditionally used in bioinformatics https://www.nextflow.io/), and it worked as a charm coordinating #duckdb #R #python and within node tasks.
Next in line is (R)?ex https://www.rexify.org/

Since we can't use the cloud to automate our #EHR analysis projects , we tried #nextflow (traditionally used in bioinformatics www.nextflow.io), and it worked as a charm coordinating #duckdb #R #python and within node tasks. Next in line is (R)?ex www.rexify.org

(R)?ex, the friendly automatio...

Since we can't use the cloud to automate our #EHR analysis projects , we tried #nextflow (traditionally used in bioinformatics https://www.nextflow.io/), and it worked as a charm coordinating #duckdb #R #python and within node tasks.
Next in line is (R)?ex https://www.rexify.org/

🧑🏾‍💻 Need help with anything #nfcore #nextflow (#bioinformatics) pipelines, whether running or developing?

⏰ Today's EMEA friendly weekly helpdesk is at 10:00-11:00 CEST (Berlin time) on the nf-core gather.town! https://nf-co.re/join#gather-town

📅 Note that we also have other regular helpdesks for different TZs!

- 🌏 Asia-Pacific: Wednesdays @ 15:00 NZDT
- 🌎 Americas: Tuesdays @ 14:00 ET

Join the nf-core slack for more details and reminders!

do you want to use #nextflow in #kubernetes but think it's difficult ?

I wrote this post about how to create a "dev environment" using k3d so you can run your pipelines in #k8s easily before to go to prod

comments are welcome

https://jorge-aguilera.blog/blog/2024/k3s-nextflow.html

https://nf-co.re/docs/contributing/project_proposals

#nfcore #nextflow

"The nf-core ‘Request for Comment’ (RFC) process is designed to give the community a voice and visibility to large projects that affect the entire community."

downloading and processing "bacteria.1.1.genomic.fna.gz" from #ncbi (300 megabytes) with nf-aspera #nextflow plugin in a few seconds

Downloading files from NCBI using #aspera into #Nextflow pipelines

To be something written in a couple of days, not do bad