#Special ✨
#RNA-Sequenzierung im Fokus: Von Parasiten über Darmbakterien bis zum Gehirn - Mario Rembold zeigt im Artikel, wie entscheidend die Probenvorbereitung für aussagekräftige RNA-Seq-Daten ist – und das von Einzelzell- und räumlicher Transkriptomik bis zur Long-Read-Sequenzierung langer neuronaler Transkripte:
https://www.laborjournal.de/rubric/methoden/methoden/v316.php
#laborjournal #lifesciences #RNASeq #SingleCell #LongRead #Transkriptomik
Pipeline release! nf-core/rnaseq v3.22.1 - nf-core/rnaseq v3.22.1 - Polished Palladium Penguin!
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.1
Pipeline release! nf-core/rnavar v1.2.2 - nf-core/rnavar 1.2.2 - Gray Red Tail!
gatk4 RNA variant calling pipeline
Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.2
#gatk4 #rna #rnaseq #variantcalling #worflow #nfcore #openscience #nextflow #bioinformatics
6/ Lastly, in https://www.nature.com/articles/s41592-023-02003-w. the observed sensitivity deficits stem from three sources: (1) poor annotation of 3′ gene ends; (2) issues with intronic read incorporation; and (3) gene overlap-derived read loss. #singlecell #RNAseq
*sigh*
A totally normal Thanksgiving thought while I'm still in wait mode for putting the turkey on the grill is that I need to update some (all) of my #Docker images I use for #HPC analysis with #snakemake.
Somehow I didn't install sleuth correctly on my bulk #RNASeq R image. Which reminded me that the images are on #Ubuntu 20. I need to just jump to 24 LTS. And automate my building and pushing. It's all manual now.
😠
Pipeline release! nf-core/rnaseq v3.22.0 - nf-core/rnaseq v3.22.0 - Palladium Penguin!
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.0
Science Team Lead - Cellular Reprogramming
e184
See the full job description on jobRxiv: https://jobrxiv.org/job/e184-27778-science-team-lead-cellular-reprogramming/
#atacseq #CRISPRa #rnaseq #ScienceJobs #hiring #research
https://jobrxiv.org/job/e184-27778-science-team-lead-cellular-reprogramming/?fsp_sid=5856
We’re live at GBioS, University of Abomey-Calavi in Benin! 5 days of learning, coding & collaboration began yesterday at #BiocInBenin.
C’est parti! Une semaine d’apprentissage et de collaboration a commencé à GBioS hier.
Ancient RNA expression profiles from the extinct woolly mammoth https://www.cell.com/cell/fulltext/S0092-8674(25)01231-0
"Here, we report transcriptional profiles from 10 Late Pleistocene woolly mammoths. One of these, dated to be ∼39,000 years old, yielded sufficient detail to recover tissue-specific regulatory mechanisms and biological functions essential for skeletal muscle metabolism, representing the oldest ancient RNA sequences recorded to date. "
🚀 New course! RNA-seq Analysis for Absolute Beginners with Dr. Lei Guo. 7 days of hands-on learning — from raw reads to publication-ready results. No coding experience needed! 💻
https://www.physalia-courses.org/courses-workshops/rnaseq-4-beginners/
Senior Biocomputation Scientist
Mimetics, LLC
We are looking for a Senior Biocomputation Scientist to help build systems using transcriptomic data to improve clients' biomanufacturing processes.
See the full job description on jobRxiv: https://jobrxiv.org/job/mimetics-llc-27778-senior-biocomputation-scientist/
#computationalbiology #dataanalyses #fermentation #RNAseq #transcriptomicdata #ScienceJobs #...
https://jobrxiv.org/job/mimetics-llc-27778-senior-biocomputation-scientist/?fsp_sid=5226
Senior Biocomputation Scientist
Mimetics, LLC
We are looking for a Senior Biocomputation Scientist to help build systems using transcriptomic data to improve clients' biomanufacturing processes.
See the full job description on jobRxiv: https://jobrxiv.org/job/mimetics-llc-27778-senior-biocomputation-scientist/
#computationalbiology #dataanalyses #fermentation #RNAseq #transcriptomicdata #ScienceJobs #...
https://jobrxiv.org/job/mimetics-llc-27778-senior-biocomputation-scientist/?fsp_sid=4498
Science Team Lead - Cellular Reprogramming
e184
See the full job description on jobRxiv: https://jobrxiv.org/job/e184-27778-science-team-lead-cellular-reprogramming/
#atacseq #CRISPRa #rnaseq #ScienceJobs #hiring #research
https://jobrxiv.org/job/e184-27778-science-team-lead-cellular-reprogramming/?fsp_sid=3805
Senior Biocomputation Scientist
Mimetics, LLC
We are looking for a Senior Biocomputation Scientist to help build systems using transcriptomic data to improve clients' biomanufacturing processes.
See the full job description on jobRxiv: https://jobrxiv.org/job/mimetics-llc-27778-senior-biocomputation-scientist/
#computationalbiology #dataanalyses #fermentation #RNAseq #transcriptomicdata #ScienceJobs #...
https://jobrxiv.org/job/mimetics-llc-27778-senior-biocomputation-scientist/?fsp_sid=3707
Pipeline release! nf-core/rnavar v1.2.1 - nf-core/rnavar 1.2.1 - Red Swordfish II!
Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.1
#gatk4 #rna #rnaseq #variantcalling #worflow #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/rnafusion v4.0.0 - 4.0.0!
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.0.0
#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/rnaseq v3.21.0 - nf-core/rnaseq v3.21.0 - Mercury Macaw!
Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.21.0
Science Team Lead - Cellular Reprogramming
e184
See the full job description on jobRxiv: https://jobrxiv.org/job/e184-27778-science-team-lead-cellular-reprogramming/
#atacseq #CRISPRa #rnaseq #ScienceJobs #hiring #research
https://jobrxiv.org/job/e184-27778-science-team-lead-cellular-reprogramming/?fsp_sid=2083
Update of our preprint on Inter-individual gene expression variability in fishes! We improved statistical analyses of continuous variables, and especially added machine learning on promoters which confirms cis-regulation of organ-specific expression variability, under stronger sequence constraint in the organs 🧠 whose genes have lower expression variability.
https://www.biorxiv.org/content/10.1101/2024.11.11.623020v3
#EvoDevo #MolecularEvolution #GeneExpression #RNAseq
Science Team Lead - Cellular Reprogramming
e184
See the full job description on jobRxiv: https://jobrxiv.org/job/e184-27778-science-team-lead-cellular-reprogramming/
#atacseq #CRISPRa #rnaseq #ScienceJobs #hiring #research
https://jobrxiv.org/job/e184-27778-science-team-lead-cellular-reprogramming/?fsp_sid=1985
