Published in JOSS: 'jax-smfsb: A Python library for stochastic systems biology modelling and inference' https://doi.org/10.21105/joss.07491 #python #JAX #scicomp #sciml #sysbio #bayesian

📢 New preprint out!
We used conformal prediction to perform uncertainty quantification in dynamic models of biological systems.

https://arxiv.org/abs/2409.02644

Great collaboration with
@MarcosMatabuena https://www.marcosmatabuena.com/

#sysbio #UQ #ML #DynamicModels

Wassup! Paper pile for weekly #Evoluncheons meetup (week 14 Aug 2023).

Some fundamental stuff, some viruses, some systems and synthetic bio with evolutionary implications (specifically, fitness effects of gene regulation).

#evolution #sysbio #synbio

We have: 1/n

I am slow and lazy. So my project on writing the textbook on computational systems biology is moving at a snail's pace.
The book chapters are here on git: https://github.com/biplabbose/Systems_Biology_Textbook

Please use the materials in your course and give me feedback for improvements.

#SysBio #textbook #computationalbiology #qBio

📣 Calling all #sysbio tool developers and users! Applications for the "Systems biology: community needs, plans, and visions" discussion @JuliaCon are now open! Brainstorm future developments and collaborate with top players in the field.
#SciML #JuliaLang #JuliaCon2023
➡️Apply now: https://forms.gle/icu9Fp1cNPPvCJsW7
➡️More info: https://pretalx.com/juliacon2023/talk/review/TFZC7Z8WHUXFMJSZHET3NKAHB7X88FSF

📣 We now have an account for COMBINE (the COmputational Modeling in BIology NEtwork) on Mastodon!

@combine – https://fediscience.org/@combine

It is currently a bit sparse, but hopefully that will improve over time.

#SystemsBiology #SysBio #Biology #ComputationalBiology #Science #ComputationalNeuroscience #Ontologies #Bioinformatics #SyntheticBiology #Neuroscience

Hi #mastodon, I'm a Microbial Systems Biologist interested in metabolic interactions in the #microbiome and how that relates to microbial #ecology. I do computational but also ferment a lot of poop 💩 Working as a research scientist at https://isbscience.org in the Gibbons lab.

I will be mostly crossposting from Twitter here unless it becomes complete 🚮🔥

#introduction #metabolic-modeling #sysbio

let's do a hashtags #introduction
I'm a biologist with a MSc in plant physiology and a PhD in plant biochemistry and molecular biology. My current interests are #AI #synbio #genomics #sysbio #RNAseq #metabolomics #plants #bioinformatics #DL #ML #statistics #R #python #julia #philosophy #aiethics

Freaking amazing that we're at the stage whereby the #evolution tag actually returns rich, meaningful posts about evolutionary biology and the people working on it. Taking advantage of this hashtag before it's overrrun by ... other ... sorts of evolution content.

More hashtags! #evobio #evotheory #ecoevo #evodevo #ecoevodevo #devobio #philbio #developmentalbiology #ees #devogenetics #sysbio