🟣Health Data Science Day 2025🟣

🥁KEYNOTE REVEAL: Naomi Wray!
She directs the Pioneer Centre for #SMARTbiomed, a Denmark-Oxford collaboration. Her research focuses on developing analytical methods for understanding common complex diseases, especially psychiatric disorders.

🗓️ 6 Nov 2025
📍 Panum, University of Copenhagen
👥 Open to all in Health Data Science
🌍 https://heads.ku.dk/calendar/2025/events/hdsd2025/

#healthdatascience
#machinelearning #deeplearning #clinicaldecisionmaking #hdsd #conference #bioinformatic

The following hashtags are trending across South African Mastodon instances:

#Today
#diy
#wine
#dubstep
#lent
#thankyou
#outreach
#bioinformatic
#proteomics
#opencl

Based on recent posts made by non-automated accounts. Posts with more boosts, favourites, and replies are weighted higher.

The following hashtags are trending across South African Mastodon instances:

#Today
#diy
#wine
#dubstep
#lent
#thankyou
#outreach
#bioinformatic
#proteomics
#opencl

Based on recent posts made by non-automated accounts. Posts with more boosts, favourites, and replies are weighted higher.

The following hashtags are trending across South African Mastodon instances:

#Today
#diy
#wine
#afriforum
#lent
#thankyou
#outreach
#polls
#hugs
#bioinformatic

Based on recent posts made by non-automated accounts. Posts with more boosts, favourites, and replies are weighted higher.

The following hashtags are trending across South African Mastodon instances:

#Today
#diy
#wine
#afriforum
#lent
#thankyou
#outreach
#polls
#hugs
#bioinformatic

Based on recent posts made by non-automated accounts. Posts with more boosts, favourites, and replies are weighted higher.

I had hoped that DIA-NN 2.02 could be accelerated by either ATI or nVidia GPUs, but I have tried with both types of cards to no avail.
#bioinformatic #proteomics #OpenCL #CUDA

Seems like gmap does this sort of thing and will output into a gff3 format 👍 It was published in 2005 - goes to show that #bioinformatic tools don’t always need to be replaced with new tools.

https://academic.oup.com/bioinformatics/article/21/9/1859/409207

Today, I don’t know what happened, but ChatGPT did not work. It was weird at the beginning to code without it, but I have to say that copying and pasting is not the best way to learn. It is true that it took me longer to finish what I was doing, but I have the sensation that I control better what I am doing. So I will try to code by myself more and just ask more specific questions to ChatGPT. #bioinformatic

@victorjavierlo Go for it! See the following website for #bioinformatic use cases: https://plotly.com/examples/bioinformatics/.

Metabarcoding, metagenomics and other omics methods revolutionize the study and monitoring of aquatic ecosystems. Come and join the 350 scientists and managers who will be discussing the use and development of these methods.
https://aquaecomics.symposium.inrae.fr/

#metabarcoding #metagenomics #fish #algae #protist #DNA #bioinformatic #pipeline #omics #MolecularEcology

Benchmarking #bioinformatic #virus identification tools using real-world #metagenomic data across biomes

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03236-4

We wonder if anyone is up for the challenge of figuring out how to repurpose the new NPU chips for simulating DNA structures and other interlinked bioinformatics simulation tasks instead of "AI" LLMs...

#dna #bioinformatics #bioinformatic #transhumanism #technology #tech #science #npu #simulation #freedomofform #opensource #gnugpl #gplv2 #biohacking

I was thinking 🤔 recently about common hurdles 🚧 with #dev, #datascience and #bioinformatic setups. Do you think they stem mainly from general workplace IT limitations, costs, personal preference, etc. Orrrr are there larger, broader issues at play? 🤔

For example, if you were given say $5k to $10k to upgrade your setup (hardware, software, home office, hey could even throw in a coffee machine), would it solve most of your current woes or would the core problem still persist?
#programming

PhD or Postdocs in computational disease biology & biomedical data science

UMass Lowell, Department of Biology & Center of Biomedical and Health Research in Data Sciences

Come join our lab at @UMLResearch using #datascience and #bioinformatic for discoveries in cancer and Alzheimers...
https://jobrxiv.org/job/umass-lowell-department-of-biology-center-of-biomedical-and-health-research-in-data-sciences-27778-phd-or-postdocs-in-computational-disease-biology-biomedical-data-science/?feed_id=70378

PhD or Postdocs in computational disease biology & biomedical data science

UMass Lowell, Department of Biology & Center of Biomedical and Health Research in Data Sciences

Come join our lab at @UMLResearch using #datascience and #bioinformatic for discoveries in cancer and Alzheimers...
https://jobrxiv.org/job/umass-lowell-department-of-biology-center-of-biomedical-and-health-research-in-data-sciences-27778-phd-or-postdocs-in-computational-disease-biology-biomedical-data-science/?feed_id=68044

PhD or Postdocs in computational disease biology & biomedical data science

UMass Lowell, Department of Biology & Center of Biomedical and Health Research in Data Sciences

Come join our lab at @UMLResearch using #datascience and #bioinformatic for discoveries in cancer and Alzheimers...
https://jobrxiv.org/job/umass-lowell-department-of-biology-center-of-biomedical-and-health-research-in-data-sciences-27778-phd-or-postdocs-in-computational-disease-biology-biomedical-data-science/?feed_id=67900

#introduction je suis étudiant en bio-informatique, actuellement je développe en #python je fais des toots en français, anglais et espagnol ! #bioinformatic

To get a comprehensive list of #neuropeptides, we combined #bioinformatic screening and mass spectrometry in collaboration with Amanda Kieswetter and Liesbet Temmerman at KU Leuven. We found 15 new proneuropeptides and confirmed the endogenous processing (cleavage, amidation etc) of many of them. #Nematostella has at least 33 neuropeptide precursors.
#cnidaria #neuroscience

@profoundlynerdy @NexusM @mjgardner sometimes glue is what one needs, especially if the subtasks have been solved by existing libraries and one only has to put the architecture together.
Watching with admiration people spending a lot of effort coding complex #bioinformatic workflows in resource demanding frameworks, when a program written in a scripting language that can do text well would have been sufficient

And finally, some skills that will be helpful: #bioinformatic and #statistical skills: population genetics/#genomics, quantitative genetics, #RNAseq, #ATACseq, integration of #multi_omics data; willingness to get involved in data generation (wet lab) is a plus.