Excited to announce our paper "Precise and scalable metagenomic profiling with sample-tailored minimizer libraries". https://academic.oup.com/nargab/article/7/2/lqaf076/8158581#522744339
1) We introduce a new implementation of the Kraken 2 method on Apache Spark, which has comparable cost-performance when classifying multiple samples.
In this course, you will learn how to use Galaxy: https://usegalaxy.eu/ 🚀 to analyse your data.
You are available June 30 - July 4 and can join us on site in Freiburg/Germany?
Then sign up HERE: https://forms.gle/HWRH3pduxgHuzwr67. But be quick🏎️💨🔥. There are only a few spots left.
#galaxy #usegalaxy #freecourse #OER #ngs #rnaseq #metagenomics #dataanalysis #freiburg (2/2)
Pipeline release! nf-core/proteinfamilies v1.2.0 - Aluminium Frog!
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.2.0
#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics
Postdoctoral Research Scientist in Metagenomics
Earlham Institute
See the full job description on jobRxiv: https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95988
#biodiversity #ecology #evolution #metagenomics #microbiome #ScienceJobs #hiring #research
https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95988
Postdoctoral Research Scientist in Metagenomics
Earlham Institute
See the full job description on jobRxiv: https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95764
#biodiversity #ecology #evolution #metagenomics #microbiome #ScienceJobs #hiring #research
https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95764
Pipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.14.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/mag v4.0.0 - mag 4.0.0 - Blue Huemul!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/4.0.0
#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/proteinfamilies v1.1.1 - Lead Sparrow!
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.1.1
#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics
New from the Brady Lab at Rockefeller University: Environmental resistome–guided development of resistance-tolerant antibiotics | PNAS
Congrats to lead author Dr. James Peek! In this paper, we propose using the existing reservoir of resistance genes/mechanisms in the environment (the "resistome") as an early warning system for antibiotic resistance in the clinic.
https://www.pnas.org/doi/10.1073/pnas.2504781122
#antibiotics #antibioticresistance #naturalproducts #resistome #drugdiscovery #metagenomics
SKiM our low-memory high-accuracy metagenomic classifier is out! Designed for classifying ONT reads with adaptive sampling in mind. Outperforms the current state of the art :-) Preprint available from: https://www.biorxiv.org/content/10.1101/2025.05.13.653326v1 Rust source code and ready to use reference database availabled from https://gitlab.com/SCoRe-Group/SKiM #metagenomics #bioinformatics
Are you an expert in #Metagenomics and #Bioinformatics? If so, our workshop, "FAIRyMAGs Hybrid Hackathon 2025: Optimizing Metagenomics Assembled Genomes Building," may be just what you're looking for! Join us in Freiburg or online from October 6-9, 2025, to collaborate and enhance your skills in metagenomic assembly.
For more information, visit: https://www.denbi.de/training-courses-2025/1884-fairymags-hybrid-hackathon-2025-optimising-metagenomics-assembled-genomes-building
Postdoctoral Research Scientist in Metagenomics
Earlham Institute
See the full job description on jobRxiv: https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95298
#biodiversity #ecology #evolution #metagenomics #microbiome #ScienceJobs #hiring #research
https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95298
Join us for a week of Training about Metagenomics and RNA-Seq in Freiburg. 🦠🧬
Check out our program: https://training.galaxyproject.org/training-material/events/2025-06-30-hts-workshop-freiburg.html#program to see more. Register now: https://forms.gle/AQ7n7zi1rUd995Me9, there are only a couple of spots available!
🚨 Reminder that the @spaam_community [https://genomic.social/@spaam_community]
will offer its fourth (virtual) summer school course sponsored by the Werner
Siemens Foundation and @NFDI4Microbiota [https://nfdi.social/@NFDI4Microbiota]
this year:
INTRODUCTION TO ANCIENT METAGENOMICS (4-8 Aug 2025)
For more info see https://spaam-community.github.io/wss-summer-school/
[https://spaam-community.github.io/wss-summer-school/] and this 🧵[1/3]
#aDNA [https://genomic.social/tags/aDNA] #Paleogenomics #metagenomics #spaam #AncientMetagenomics #AncientDNA #Microbiome #eDNA
Pipeline release! nf-core/proteinfamilies v1.1.0 - Nickel Elephant!
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.1.0
#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics
Postdoctoral Research Scientist in Metagenomics
Earlham Institute
See the full job description on jobRxiv: https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95110
#biodiversity #ecology #evolution #metagenomics #microbiome #ScienceJobs #hiring #research
https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95110
Postdoctoral Research Scientist in Metagenomics
Earlham Institute
See the full job description on jobRxiv: https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95041
#biodiversity #ecology #evolution #metagenomics #microbiome #ScienceJobs #hiring #research
https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-in-metagenomics/?feed_id=95041
Next @deNBI #training course by @galaxyfreiburg: From Data to Discovery: #Metagenomics, #RNAseq - #NGS #Bioinformatics with @galaxyproject (Freiburg, June 30 – July 4, 2025). Registration deadline: May 11. Read more: https://www.denbi.de/training-courses-2025/1883-from-data-to-discovery-metagenomics-rna-seq-ngs-bioinformatics-with-galaxy
Hold the press: a "game-changing" test saves a woman's sight! 🎉 Because, you know, Dr. Google had a day off. No doubt the #metagenomics test will soon replace crystal balls and magic potions in hospitals everywhere. 🔮⚗️
https://www.bbc.co.uk/news/articles/czx45vze0vyo #gamechanger #sightsaving #healthtech #medicalinnovation #newsworthy #HackerNews #ngated
Metagenomics test saves woman's sight after mystery infection
https://www.bbc.co.uk/news/articles/czx45vze0vyo
#HackerNews #Metagenomics #Sight #Infection #Health #Innovation
