The whole study is done painstakingly on manual genome annotation and analysis combined with #metatranscriptomics. I wonder, whether metabolic modeling would have predicted the same.

Pipeline release! nf-core/metatdenovo v1.2.0 - nf-core/metatdenovo 1.2.0!

Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.2.0

#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/metatdenovo v1.1.1 - nf-core/metatdenovo 1.1.1!

Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.1.1

#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics

Viroid-like “obelisk” agents are widespread in the ocean and exceed the abundance of RNA viruses in the prokaryotic fraction.
#Viroids #Obelisks #HammerheadRibozyme #Metatranscriptomics #UncorrectedManuscript
https://academic.oup.com/ismej/advance-article/doi/10.1093/ismejo/wraf033/8042533

Pipeline release! nf-core/metatdenovo v1.1.0 - Nf-core/metatdenovo 1.1.0!

Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.1.0

#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics

🦠 Interested in #nextflow & anything 'meta-' ?(#metagenomics, #metabarcoding, #metatranscriptomics, #metaproteomics, #microbes #MicrobialEcology & more!)

📆 Join us next Tuesday 13:00 CEST (3rd September) for an nf-core #bytesize for the #metaomics #nfcore special interest group! (Also on YouTube after!)

🤝 We will introduce how we want the community to work together with #users and #bioinformatics developers to make the best pipelines for anything 'meta-'

ℹ️ Zoom: https://nf-co.re/events/2024/bytesize_sig_meta_omics

Scientists map #soil #RNA to #fungal #genomes to understand #forest ecosystems.

#microbiome #Metatranscriptomics

https://phys.org/news/2024-04-scientists-soil-rna-fungal-genomes.html

Time-resolved analysis of microbial mats - using metatranscriptomics!

Amanda Shelton from Carnegie at #JGI2023

#jgi @LBNLBioSci #microbiology #metagenomics #metatranscriptomics

"**MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities"**

https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01562-6

#RNAseq #metatranscriptomics #microbes #bioinformatics #pipeline

Today is the LAST DAY to apply for our joint CBW-IMPACTT Microbiome Analysis Workshop at the early-bird rate! July 5-7, 2023 at the University of Calgary. Apply here: https://bioinformatics.ca/workshops-all/2023-cbw-impactt-microbiome-analysis/

#bioinformatics #workshop #16S #18S #sequencing #shotgunsequencing #metagenomics #genomics #transcriptomics #metatranscriptomics #longread #markergene #functionalannotation #tutorial #statistics #biostatistics #microbiome #microbiota #microbialecology #diversity #betadiversity #differentialabundance

Do you want to learn #Metagenomics #Metatranscriptomics #Bioinformatics and #MultiOmics?

Join us in June for this amazing course with Physalia Courses!

https://physalia-courses.org/courses-workshops/course33/

There are still a few seats available!

Thank you to everyone who attended (and taught at) our Bioinformatics Workshop earlier this week at McGill University! Learn more and sign up for updates about future workshops here: https://www.impactt-microbiome.ca/bioinformatics-workshop/

#bioinformatics #workshop #QIIME2 #metagenomics #metatranscriptomics #transcriptomics #functional #analysis #statistics #microbiome #data #datascience

Here is my #introduction - I am a #microbial #ecologist with Eawag: #Swiss Federal Institute of #Aquatic #Science and Technology in the Surface Waters department. Interested in the role of #microbes in #biogeochemistry of #lake, #river, #sediment & #wastewater. Also #research on #AntibioticResistance in the #environment.
We use #metagenomics, #metatranscriptomics #qPCR and good old-fashioned #microbiology.

#MicrobialEcology
#EnvironmentalMicrobiology
#AMR #Antibiotic
#methane #nitrogen

A few more hashtags for good measure:
#WomenInScience #WomenInSTEM #momademia #bacteria #metatranscriptomics #MicrobialEcology