Pipeline release! nf-core/ampliseq v2.15.0 - Ampliseq Version 2.15.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.15.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.14.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.13.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Rapid folding of nascent RNA regulates eukaryotic RNA biogenesis.

#RNA #Folding #rRNA #mRNA #U2snRNA #CotranscriptionalStructureTracking #Eukaryotes #Yeast

https://www.sciencedirect.com/science/article/pii/S109727652500187X?dgcid=author

Pipeline release! nf-core/ampliseq v2.12.0 - Ampliseq Version 2.12.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.12.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.11.0 - Ampliseq Version 2.11.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.11.0

#16s #18s #amplicon-sequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomic-classification #taxonomic-profiling #nfcore #openscience #nextflow #bioinformatics

EUKARYOME: the rRNA gene reference database for identification of all eukaryotes

https://academic.oup.com/database/article/doi/10.1093/database/baae043/7691782

#rRNA #18S #ITS #28S #animals #protists #fungi #plants #ArbuscularMycorrhizalFungi

Pipeline release! nf-core/ampliseq v2.10.0 - Ampliseq Version 2.10.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.10.0

#16s #18s #amplicon-sequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomic-classification #taxonomic-profiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.9.0 - Ampliseq Version 2.9.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.9.0

#16s #18s #amplicon-sequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomic-classification #taxonomic-profiling #nfcore #openscience #nextflow #bioinformatics

Phylogenetic Relationships among Naked Amoebae Found in Natural Biotopes - #nakedamoeba #morphology #the18SrRNAgene #phylogeny #naturalbiotopes #18S #rRNA #amoeba - https://link.springer.com/article/10.3103/S0095452723060063

Scientists discover novel way to attack the #trypanosome #parasite through its #ribosome.

#rRNA #pseudouridine

https://phys.org/news/2023-12-scientists-trypanosome-parasite-ribosome.html

Scientists raise alarm as #bacteria are linked to mass death of #sea_sponges weakened by #warming Mediterranean.

#Vibrio #rRNA #climate_change #Sarcotragus

https://phys.org/news/2023-12-scientists-alarm-bacteria-linked-mass.html

On the limits of 16S rRNA gene-based metagenome prediction and functional profiling

"16S rRNA gene-based functional inference tools generally do not have the necessary sensitivity to delineate health-related functional changes in the microbiome and should thus be used with care"

https://www.biorxiv.org/content/10.1101/2023.11.07.564315v1

#metabarcoding #16S #rRNA #CopyNumber #bias #FunctionalInference #prediction

Singling out a #bacterium from the crowd.

#rRNA #M3_seq #phages

https://phys.org/news/2023-09-singling-bacterium-crowd.html

Researchers have created a significant resource of #rRNA sequences from 33 globally distributed #mosquito species, benefiting the study of mosquitoes and the #pathogens they carry. #Microbiology https://elifesciences.org/articles/82762?utm_source=mastodon&utm_medium=social&utm_campaign=organi