Pipeline release! nf-core/pairgenomealign v2.2.1 - nf-core/pairgenomealign v2.2.1 – C’est quoi ça?!
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.1
#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/pairgenomealign v2.2.0 - nf-core/pairgenomealign v2.2.0 – Chagara ponzu!
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.0
#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/pairgenomealign v2.1.0 - nf-core/pairgenomealign v2.1.0 – Goya champuru!
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.1.0
#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/pairgenomealign v2.0.0 - nf-core/pairgenomealign v2.0.0 – Naga imo!
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.0.0
#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/pairgenomealign v1.1.1 - nf-core/pairgenomealign v1.1.1 – Kani nabe!
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.1.1
#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/pairgenomealign v1.1.0 - nf-core/pairgenomealign v1.1.0 – Nattou Maki!
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.1.0
#comparative-genomics #dot-plot #genomics #last #pairwise-alignment #synteny #whole-genome-alignment #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/pairgenomealign v1.0.0 - nf-core/pairgenomealign v1.0.0 – Sweet Potato!
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.0.0
#comparative-genomics #dot-plot #genomics #last #pairwise-alignment #synteny #whole-genome-alignment #nfcore #openscience #nextflow #bioinformatics
Reconstructing the #TreeOfLife is a central goal in biology. @jlsteenwyk & Nicole King discuss the use of #synteny for reconstructing the ToL and propose a roadmap for conducting rigorous & accurate synteny-based #phylogenomic analysis #PLOSBiology https://plos.io/3Vavczo
A window into #plant #evolution: The unusual #genetic journey of #lycophytes.
https://phys.org/news/2024-01-window-evolution-unusual-genetic-journey.html
🔍 Check out our revamped Local Synteny Viewer for comparing genomic neighborhoods across extant and ancestral genomes. A powerful tool for genomic research. #Synteny #Genomics #OMAUpdate2024
@griggo_grig from presenting Phynteny at APG Awards Fest. 🧬🦠🔬🌟 You can predict the functions of unknown phage genes using an LSTM model trained with phage synteny.
•
Check out Phynteny at https://github.com/susiegriggo/Phynteny
•
#phages #bacteriophages #synteny #APGAwardsFest2023
New #animal family tree raises questions about the origin of nervous systems.
New paper from my old group:
Long-read genome assemblies of 33 species of eucalypt (gum tree) from across Australia, encompassing ~70My of evolution. Key finding: macrosynteny is preserved, but microsynteny rampantly disrupted. Cool result given the propensity for inter-specific hybridization and gene flow.
Preprint here: https://www.biorxiv.org/content/10.1101/2023.04.19.537464v1
Feel free to reach out with any Q's!
#preprint #genome #trees #eucalyptus #genomics #genomeassembly #biorxiv #botany #synteny #structuralvariation
At #PAG30 earlier this month, we presented a hands on #JBrowse2 tutorial, where the attendees could log into a server, run through setting up a JBrowse 2 instance and added quite a lot of data, including #synteny and #structuralVariation. A video of that tutorial and accompanying updated tutorial to make it easier to do "on your own" are now available at YouTube: https://youtu.be/0MtYsAFEMXI and the tutorial page is at http://gmod.org/wiki/JBrowse2_Tutorial_PAG_2023
