Andrew Perry

Some kinda structural bioinformatician & software making person.

"nobot"

2025-12-20

A beautiful wooden model of pancreatic trypsin inhibitor (5PTI, Wlodawer et al, 1984).

From: pmc.ncbi.nlm.nih.gov/articles/

A finely crafted wooden model of a protein structure, C-alpha backbone trace, created by precisely joining together segments of wooden rod cut at specific angles
Andrew Perry boosted:
Arthur Charpentier ⏚ 🇨🇦 🇯🇵freakonometrics
2024-05-10

“I went back to warn them, but they already knew and didn’t seem to care.” newyorker.com/cartoons/daily-c ht @W_Lucht @martinanota

2022-11-23

So here are all the Alphafold2 forks/reimplementations/related-ideas that I'm aware of and still catching up on:

ColabFold: github.com/sokrypton/ColabFold

OpenFold: github.com/aqlaboratory/openfo

ESMFold: github.com/facebookresearch/es

FastFold: github.com/hpcaitech/FastFold

OmegaFold: github.com/HeliXonProtein/Omeg

RoseTTAFold: github.com/RosettaCommons/Rose

Have I missed any notable or interesting ones ?

2022-11-22

At the latest ARDC techtalk by @Sbollmann_MRI and Audrey Stott - "Containers for Scientific Software Distribution Service including security scanning and CVMFS"

Great proposal for providing a community-lead container build and distribution infrastructure for HPC in Australia.

Slides at: sites.google.com/ardc.edu.au/t (video later)

Client Info

Server: https://mastodon.social
Version: 2025.07
Repository: https://github.com/cyevgeniy/lmst