Virginie Uhlmann

Research group leader at EMBL-EBI. Plays with maths and computers, loves bioimages, mountains, and birds.

Location
Cambridge, UK
Virginie Uhlmannvuhlmann@mstdn.science
2023-04-27

RT @Ruprecht_Lab
Very happy to share a great news for our lab while already celebrating its 1st anniversary 🎂
We are talking about the @Plast_Cell project, carried out together with incredible collaborators @TCeliaTerrassa @VirginieUhlmann @CherryBiotech funded by @EUeic 🥳 Stay tuned! twitter.com/crgenomica/status/

Virginie Uhlmannvuhlmann@mstdn.science
2023-04-25

Very proud of this beautiful piece of work from @MurriWurri!
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RT @MurriWurri
Interested in Nuclear Pore Complex (NPC) structural variability? Using the NPC as a microscopy reference standard? Looking to benchmark or develop methods to analyse ring-like structures? Check out our preprint and github!

biorxiv.org/content/10.1101/20

github.com/uhlmanngroup/cir4mi
twitter.com/MurriWurri/status/

Virginie Uhlmannvuhlmann@mstdn.science
2023-04-03

RT @emblebi
Identify cell types in your electron microscopy (EM) data using MorphoFeatures.

Developed by @embl researchers, MorphoFeatures is a novel unsupervised deep learning method for extracting cellular morphology directly from 3D EM images.

elifesciences.org/articles/809

Example of the electron microscopy images used to identify different tissues by MorphoFeatures
Virginie Uhlmannvuhlmann@mstdn.science
2023-03-02

RT @EMBLHeidelberg
Theory@EMBL welcomes scientists to do sabbaticals in our unique research environment.

Our most recent visitor is @HernanGGarcia from @UCBerkeley. Co-hosted by EMBL’s Genome Biol. & Dev. Biol units, Garcia´s visit is sponsored by the prestigious @AvHStiftung Bessel award.

Eileen Furlong and Hernan Garcia at the EMBL Heidelberg Campus. credits: Kinga Lubowiecka/ EMBL
Virginie Uhlmannvuhlmann@mstdn.science
2023-02-20

If you've been wondering what the fantastic @JohannesHugger has been doing in the lab, now you know :)
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RT @eLife
The new tool MorphoFeatures allows researchers to automatically assign cell types and tissues in electron microscopy images, a step which is critical for understanding complex organisms. elifesciences.org/articles/861
twitter.com/eLife/status/16273

Example of an electron microscopy image of tissue with certain tissues and cell types labelled in yellow and blue
Virginie Uhlmannvuhlmann@mstdn.science
2023-02-20

RT @vnzinchenko
Proud to announce our project on learning morphological descriptors of cells in EM data has been published in @eLife 😎 Many thanks to Louis Scheffer for this great insight article about our paper! twitter.com/eLife/status/16273

Virginie Uhlmannvuhlmann@mstdn.science
2023-02-16

RT @LongFormMath
Roses are red
Violets are blue

Virginie Uhlmannvuhlmann@mstdn.science
2023-02-15

In addition to their exciting science, @TinaHaase3 and @luca_rappez brought the @EMBLBarcelona sun to Cambridge 🌞
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RT @TinaHaase3
Thanks to @VirginieUhlmann for hosting my first visit to @emblebi - many great chats on vasculature and segmentation with @luca_rappez 😊
twitter.com/TinaHaase3/status/

Virginie Uhlmannvuhlmann@mstdn.science
2023-02-06
Virginie Uhlmannvuhlmann@mstdn.science
2023-02-06

Want to work at the intersection of morphometry and representation learning for bioimage analysis?

We have TWO open postdoctoral positions! Each comes with its own challenging biological question, unique dataset, and exceptional team of collaborators!

Details below👇

Virginie Uhlmannvuhlmann@mstdn.science
2023-02-02

RT @martinmbauer
Complex analysis is the closest thing to magic in all of maths & physics twitter.com/EulerWept/status/1

Virginie Uhlmannvuhlmann@mstdn.science
2023-01-25

There are many things I love about this collaboration with the amazing @DimitriFabreges@twitter.com and that includes SPLINE EMBRYOS.

RT @DimitriFabreges@twitter.com

Stochasticity controls robustness in embryogenesis. Although it may sound counterintuitive, this is one of the conclusions we defend in our preprint "Temporal variability and cell mechanics control robustness in mammalian embryogenesis" (bioRχiv: biorxiv.org/content/10.1101/20).

🐦🔗: twitter.com/DimitriFabreges/st

Virginie Uhlmannvuhlmann@mstdn.science
2023-01-25

There are many things I love about this collaboration with the amazing @DimitriFabreges and that includes SPLINE EMBRYOS.
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RT @DimitriFabreges
Stochasticity controls robustness in embryogenesis. Although it may sound counterintuitive, this is one of the conclusions we defend in our preprint "Temporal variability and cell mechanics control robustness in mammalian embryogenesis" (bioRχiv: biorxiv.org/content/10.1101/20
twitter.com/DimitriFabreges/st

Virginie Uhlmannvuhlmann@mstdn.science
2022-12-15

I am in love with this paper 😍

RT @CiminiLab@twitter.com

A fantastic group of authors, spearheaded by the amazing @SenftRebecca@twitter.com and @bdiazrohrer@twitter.com , have a new preprint for your end-of-year-reading lists! In the 🧵, learn a bit more about "A biologist's guide to the field of quantitative bioimaging" 1/x

zenodo.org/record/7439284#.Y5p

🐦🔗: twitter.com/CiminiLab/status/1

Virginie Uhlmannvuhlmann@mstdn.science
2022-12-15

I am in love with this paper 😍
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RT @CiminiLab
A fantastic group of authors, spearheaded by the amazing @SenftRebecca and @bdiazrohrer , have a new preprint for your end-of-year-reading lists! In the 🧵, learn a bit more about "A biologist's guide to the field of quantitative bioimaging" 1/x

zenodo.org/record/7439284#.Y5p
twitter.com/CiminiLab/status/1

Virginie Uhlmannvuhlmann@mstdn.science
2022-12-01

If you can't answer the big questions of our time, ChatGPT, what are you useful for?

Virginie Uhlmannvuhlmann@mstdn.science
2022-12-01

If you can't answer the big questions of our time, ChatGPT, what are you useful for?

Virginie Uhlmannvuhlmann@mstdn.science
2022-12-01

And also big shoutout to @SylvainCorlay@twitter.com and @QuantStack@twitter.com for being supportive of open-source software originating from academia !

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