Sean Gibbons

microbiome science | assoc prof @ Inst. for Systems Bio (ISB) | affiliate faculty at Univ. of Washington BioE and Genome Sciences | eScience Inst. and Applied Micro. Int. fellow | WRF investigator | systems bio of 💩 🦠 | 🧫🧬💻⚕️ | 🏳️‍🌈 he/him

2024-09-13

Want to learn how to process 16S microbiome data, conduct analyses, & visualize results?

Want to learn community-scale metabolic modeling?

Want to hear talks from experts on the gut-brain axis?

Register for the 2024 ISB Virtual Microbiome Series!

isbscience.org/microbiome2024/

2024-07-11

Excited to share that Nick Quinn-Bohmann's recent paper is the July cover-article in Nature Microbiology!

Check it out our paper here: nature.com/articles/s41564-024

Cover art (attached) by the amazing Sam D'Orazio, in consultation with Allison Kudla at ISB 🤩

This work was co-supervised by @thaasophobia, & we had help from an amazing team of collaborators.

Sean Gibbons boosted:
2024-02-08

Happy to announce that my last preprint from the Gibbons Lab at ISB is now out at biorxiv.org/content/10.1101/20 . In the end it took us almost 5 years to make this work well.

Dietary intake is major factor in many studies but is not easy to measure on a fine-grained level. Our idea was to use metagenomic shotgun sequencing of fecal samples to detect and quantify food-derived DNA.

Sean Gibbons boosted:
2023-12-16

🐈 ← 💼 Some personal news: Early 2024 I will be joining the faculty of the @medunigraz. It's definitely a bitter-sweet moment leaving the amazing @gibbological lab at ISB, but I am very excited for what comes next and can't wait to work with the great research community in Graz (and Europe). cdiener.com/posts/meduni-graz/

2023-09-14

Check out the latest paper from our lab: "Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes" in Nature Communications nature.com/articles/s41467-023

2023-09-12

@MicrobioJC purple rain, purple rain

Sean Gibbons boosted:
2023-09-12

I'm excited to announce that the 2023 ISB Virtual Microbiome Series registration site is live!

We will host a 2-day bioinformatic course and a 1-day symposium Oct. 11-13.

This year's theme is 'how the ecology of our guts protects us from pathogens'

isbscience.org/microbiome2023/

2023-09-08

I'm excited to announce that the 2023 ISB Virtual Microbiome Series registration site is live!

We will host a 2-day bioinformatic course and a 1-day symposium Oct. 11-13.

This year's theme is 'how the ecology of our guts protects us from pathogens'

isbscience.org/microbiome2023/

Sean Gibbons boosted:
2023-08-13

Island biogeography theory and the gut: why taller people tend to harbor more diverse gut microbiomes. biorxiv.org/content/10.1101/20

Sean Gibbons boosted:
Trends in MicrobiologyTrendsMicrobiol@mstdn.science
2023-07-31

Out online now: Spotlight on 'A changing gut virome ecological landscape with longevity'

cell.com/trends/microbiology/f

@TWilmanski @gibbological

Sean Gibbons boosted:
2023-05-12

Special collection of immunology articles from JEM. Happy to see our paper highlighted!
t.co/m66ZTYreA9 rupress.org/DocumentLibrary/Co

2023-05-05

RT @Alice_E_Kane
I will be talking about frailty and epigenetic clocks in 🐭 at this virtual NIA workshop on heterogeneity in aging - my favorite topic! Mon/Tues 5/8-9, registration is free! twitter.com/NIHAging/status/16

2023-05-05

RT @alexhbnr
In our study published today in @ScienceMagazine, we provide a proof of concept for the potential use of ancient microbes as a source for developing new drugs by synthesising previously unknown metabolites from reconstructed gene clusters. science.org/doi/10.1126/scienc

2023-05-05

Proud to announce that @joemyxter and I took the @isbsci cornhole championship trophy home again this year 🌽🏆 🫅

2023-05-05

And @BioBohmann brought home the best poster award 🥇

Be it science or sport, we came home from Leavenworth laden with victory 💥

2023-05-04

RT @rossbenjamind
*Very* excited to share our latest paper in which we use metagenomics to understand how microbiome development during early life is altered in infants with cystic fibrosis. Led by @pesalerno and @ajverster biorxiv.org/content/10.1101/20 @MCBDartmouth @m2p2_dartmouth @DartCF

2023-05-04

A fine day for the @isbsci annual retreat 🏔️🌞

Photo credit @avcarrology

2023-05-03

RT @drsueishaq
That's a wrap on the 2023 @MicroSocEquity speaker series! Thanks to our speakers, attendees, organizers, and support by @UMaine_Medicine and CADLS.

Catch up on the entire 2023 series, as we have updated the event page with links to the recordings:
sueishaqlab.org/microbes-and-s

2023-05-02

RT @cellhostmicrobe
Fuso induces tumor resistance to #immunotherapy. New work reports that Fusobacterium nucleatum-derived succinic acid diminishes sensitivity to anti-PD-1 mAb in #ColorectalCancer by impairing CD8+ #Tcell-mediated antitumor immunity cell.com/cell-host-microbe/ful

2023-05-02

RT @gilbertjacka
Trust Your Gut: Is the Microbiome the New Disruptor in Healthcare and Disease Treatment? milkeninstitute.org/panel/1434

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