#BlobToolKit

2022-12-01

#BlobToolKit was designed to make colourful plots to help spot contaminants in fragmented genome assemblies. The latest chromosomal assemblies released by #DarwinTreeOfLife, were threatening to make the traditional blob plots redundant so #BlobToolKit now lets you look inside the blobs to see parameter distributions along each chromosome, e.g. to highlight the centromeric repeats. Try it out at blobtoolkit.genomehubs.org/vie

A plot of GC vs coverage for all contigs in a contaminated assembly, labelled by taxonA plot of GC vs coverage for a chromosomal assemblyA plot of base coverage against chromosomal location for 5 chromosomes of an Arabidopsis thaliana genome assembly

Client Info

Server: https://mastodon.social
Version: 2025.04
Repository: https://github.com/cyevgeniy/lmst