#MicrobialGenomes

James Fellows Yatesjfy133@genomic.social
2023-02-16

🦠 I'm happy to present a new nf-core pipeline for people interested in functional analysis of #MicrobialGenomes / #Metagenomes / #Microbiomes !

If you're interested in mining metagenomes for functional groups such as #AntiMicrobialResistance genes, #AntiMicrobialPeptides or #BiosyntheticGeneClusters, @nf_core /funcscan automates the screening of such sequences from input contigs or genomes in a highly parallelised, portable, and reproducible manner

genomic.social/@nf_core@mstdn. 🧵 [1/2]

Leighton Pritchardwiddowquinn@mstdn.science
2022-11-07

Some context: on one level, the main problem we're trying to solve is how to generate a quantitative, unbiased, uniquely-addressable scheme for organising #microbialgenomes - and this could address important practical issues: frontiersin.org/articles/10.33 3/8

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