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#PlantDataExchange

Donald Hoberndhobern@scicomm.xyz
2022-12-20

Preprint released from the #BioHackEU22 #PlantDataExchange session. This tries to link and map between several key data standards and technologies for crop/plant data, including Minimum Information for a Plant Phenotyping Experiment (#MIAPPE), Breeding API (#BrAPI), the Investigation-Study-Array model (#ISA-Tab), RO-Crate, Bioschemas.org and more.

I hope much of this can be applied in work to make data #FAIR at the Australian Plant Phenomics Facility (#APPF).

biohackrxiv.org/c724r/

Workflow diagram from preprint, showing multiple possible sources of plant phenotyping data on the left (FAIRDOM-SEEK and PHIS or PIPPA communicating over BrAPI; DataPLANT; and standalone template data) feeding into an Investigation-Study-Assay model organised as an Annotated Research Context (ARC), which can then be packaged using RO-Crate or fed into a repository." title="Workflow diagram from preprint, showing multiple possible sources of plant phenotyping data on the left (FAIRDOM-SEEK and PHIS or PIPPA communicating over BrAPI; DataPLANT; and standalone template data) feeding into an Investigation-Study-Assay model organised as an Annotated Research Context (ARC), which can then be packaged using RO-Crate or fed into a repository.

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