Finally got around to release a tiny pipeline together with Susanne Jodoin:
https://github.com/qbic-pipelines/vcftomaf

It takes VEP-annotated VCFs, filters them, and converts them to MAF format. Tested with @nf_core /sarek generated VCF files.

The nf-core hackathon is back! Join us Mon 18th - Wed 20th March 2024 for 3 days of Nextflow and fun!

In 2023 we supported local sites for the first time. With almost 20 volunteers organizing local sites around the world, they were a massive success. In 2024, we hope to replicate and build on that success!

For this, we need you! Follow the instructions on our website to get in touch and find out more.

Registration for hackathon participants will open on February 15.

https://nf-co.re/events/2024/hackathon-march-2024

Happy I could present a poster at @scilifelab #DDLS meeting poster session yesterday - on a new project I'm working on: A tool to track the provenance of any shell command. Check it out at position 21 or here in this blog post: https://bionics.it/posts/scicommander-0.3 (Can't join in person today)

New release with a few new tools✨

🔀 NGSCheckmate to find sample swaps
🧬 Sentieon DNAScope Support
📏 CNVKit Genemetrics
🔬 BCFTools annotate

Special shout-out to Grant Neilson, Simon Pearce, and Raquel Manzano
for their first contributions 😍 and everyone that helped out!

https://mstdn.science/@nf_core/111415640484304266

Pipeline release! nf-core/sarek v3.4.0 - Sarek 3.4.0 - Pårtetjåkko!

Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.4.0

Hello bioinformatics learners and teachers! 👋

Do you want to find all this awesome training materials on GitHub and GitLab? Check out #Glittr (https://glittr.org): a nice web app that lets you search and compare #bioinformatics courses by topic, popularity and recency. 🚀 Whether you want to learn new skills or reuse existing materials in your own courses, Glittr.org has you covered. 😎 Check it out and share your feedback with us! 💬

🦠 I'm happy to present a new nf-core pipeline for people interested in functional analysis of #MicrobialGenomes / #Metagenomes / #Microbiomes !

If you're interested in mining metagenomes for functional groups such as #AntiMicrobialResistance genes, #AntiMicrobialPeptides or #BiosyntheticGeneClusters, @nf_core /funcscan automates the screening of such sequences from input contigs or genomes in a highly parallelised, portable, and reproducible manner

https://genomic.social/@nf_core@mstdn.science/109868600236675816 🧵 [1/2]

RT @tallphil
Excited to be involved in this @GenomeWeb webinar, talking about our experiences in the cloud with @nf_core 🎉☁️💻 https://twitter.com/seqeralabs/status/1597887600932552704

Re-opening a paper draft he has not touched in months, the grad student has no idea what he was thinking.