Rare taxa in the core #microbiome https://www.sciencedirect.com/science/article/pii/S0966842X25000782

Perceptions and misconceptions in visualizing parasite life cycles https://www.sciencedirect.com/science/article/pii/S1471492225000674

ParAquaSeq, a Database of Ecologically Annotated rRNA Sequences Covering Zoosporic Parasites Infecting Aquatic Primary Producers in Natural and Industrial Systems #eDNA #metabarcoding #protists https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.14099

ORDNA: Deep-learning-based ordination for raw environmental DNA samples #eDNA #metabarcoding https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.70033

Horizontal Transfer of Bacterial Operons into Eukaryote Genomes #protists #protistsonsky https://academic.oup.com/gbe/article/17/4/evaf055/8088018

eDNAjoint: An R package for interpreting paired or semi-paired environmental DNA and traditional survey data in a Bayesian framework #eDNA #metabarcoding https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.70000

Cryptic infection of a giant virus in a unicellular green alga #protists https://www.science.org/doi/10.1126/science.ads6303

Eukfinder: a pipeline to retrieve microbial eukaryote genome sequences from metagenomic data
#protists https://journals.asm.org/doi/10.1128/mbio.00699-25

High-quality genome assembly of the azooxanthellate #coral Tubastraea coccinea (Lesson, 1829) https://www.nature.com/articles/s41597-025-04839-7

CCS-Consensuser: A Haplotype-Aware Consensus Generator for PacBio Amplicon Sequences https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.14113

The emergence of eukaryotes as an evolutionary algorithmic phase transition https://www.pnas.org/doi/full/10.1073/pnas.2422968122

Refining #microbiome diversity analysis by concatenating and integrating dual 16S rRNA amplicon reads https://www.nature.com/articles/s41522-025-00686-x

Genetic Analysis of Polyunsaturated Fatty Acids Biosynthesis Pathway Determines Four Distinct Thraustochytrid Types #protists https://enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/1462-2920.70090

The first de novo HiFi genome assemblies for three clownfish-hosting sea anemone species (Anthozoa: Actiniaria) #corals https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evaf064/8108437

Genome and Metagenome Skimming: Future Sequencing Methods for Environmental DNA (#eDNA) Studies https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.14095

Protein signatures predict coral resilience and survival to thermal bleaching events #corals #holobiont https://www.nature.com/articles/s43247-025-02167-7

Diel patterns of symbiont expulsion in Caribbean reef #corals are coral species-dependent and driven by symbiont load and photosynthetic performance #symbiosis #protists https://link.springer.com/article/10.1007/s00338-025-02634-9

From ‘nitrosome’ to ‘nitroplast’: stages in the evolution of nitrogen-fixing organelles from free-living diazotrophs #symbiosis https://link.springer.com/article/10.1007/s13199-025-01033-6

Cross-kingdom-mediated detection of intestinal protozoa through NLRP6 #protists #symbiosis #microbiome https://www.sciencedirect.com/science/article/pii/S1931312825000563

Reconstructing the dynamics of past coral endosymbiotic algae communities using coral ancient DNA (coraDNA) #corals #symbiosis #microbiome https://link.springer.com/article/10.1007/s00338-025-02621-0