Once I'm happy, or I abandoned modeling the last remaining bits of unexplained density or fixing the last subtle model errors in places mostly irrelevant to the biological question the model is meant to answer, then I run `phenix.validation_cryoem` on the half-maps and atomic model. This gives me most of the numbers to put in the refinement table. And I deposit the model into the #PDB and maps into the #EMDB. Fin.

Happy to hear any comments or descriptions of how other people do this!

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