Can you answer this question about quitting #pdb without the extra confirmation? https://software.codidact.com/posts/295305

Протестът в София премина без тежко пострадали. Линейките направиха 22 курса, 10 души бяха откарани за прегледи. Недоволството беше насочено срещу проектобюджет 2026. В късните часове имаше напрежение.
#Протест #София #Бюджет2026 #СпешнаПомощ #Политика #Новини #PDB https://paralell.eu/bulgaria/obshtestvo/protestat-v-sofiya-priklyuchi-bez-tezhki-travmi-no-s-naprezhenie-v-kasnite-chasove/

Analisis Fundamental Forex: Mengukur Dampak Geopolitik terhadap Pair Utama

#Tradingan - #Analisis Fundamental Forex: Mengukur Dampak #Geopolitik terhadap Pair Utama - Dalam dunia perdagangan valuta asing (#forex), #analisis fundamental merupakan salah satu pilar utama untuk memahami arah pergerakan harga. Faktor-faktor seperti #inflasi, data tenaga kerja, produk domestik bruto (#PDB), hingga kebijakan bank sentral sering menjadi acuan #trader dalam mengambil keputusan.…

https://tradingan.com/analisis-fundamental-forex-mengukur-dampak-geopolitik-terhadap-pair-utama

@JoelKlebanoff @w7voa she won't use human capital. She'll use ai. Copy and paste the #pdb into #chatgopt and you make govt more efficient!

@GottaLaff

#Trump doesn't need the President's #PDB

Trump has #StephenMiller to tell him everything Trump needs to know

Current #status: debugging using #Python #PDB (or any other debugger that wants to use standard I/O) will not work when distributing tests with pytest-xdist

https://pytest-xdist.readthedocs.io/en/stable/known-limitations.html

#Trump, meanwhile, reportedly doesn’t read the #PDB [doesn’t read period], & if the Politico report is accurate, he’s receiving in-person briefings only once every 10 days.

Broadly speaking, a couple of angles are worth keeping in mind in response to reporting like this. The first is probably obvious: Trump is dealing w/serious #NationalSecurity challenges—war in #Ukraine, a crisis in the #MiddleEast, #China expanding its global #influence, #domestic #security #threats…

https://www.politico.com/news/2025/05/09/trump-intelligence-briefing-frequency-00338946

Politico’s report…added that the low number of #Trump’s briefings “is troubling to many in & around the #intelligence community….”

…different presidents have approached these briefings in different ways. George W. Bush received intelligence briefings on a nearly daily basis. Obama received briefings every other day, but he was known to be a voracious reader of the written President’s Daily Brief (the #PDB). Biden received an in-person briefing twice a week, but also an avid reader the PDB.

#KOReader
An #ebook #reader application supporting PDF, DjVu, EPUB, FB2 and many more formats, running on #Cervantes, #Kindle, #Kobo, #PocketBook and #Android devices.
http://koreader.rocks/
#EPUB #PDF #DjVu #XPS #CBT #CBZ #FB2 #PDB #TXT #HTML #RTF #CHM #DOC #MOBI #ZIP

thanks #ccp4bb for the POTUS data bank #pdb :D

https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=ind2503&L=CCP4BB&O=D&P=226769

Well, I am sad. I’ve been trying to debug code running on a #thread in #Python. I’ve used #PyCharm, #pdb, and #ipdb. Nothing stops at a breakpoint on the thread. So much happening on the thread is invisible to me. Ugh.

Our ARTEMIS tool for aligning 3D structures of nucleic acids is now equipped with a detailed Tutorial, covering structure searches, sub-optimal matches, and even PDB/CIF conversion, check it out:

https://github.com/david-bogdan-r/ARTEMIS/blob/main/ARTEMIS_TUTORIAL_v1.51.pdf

#RNA #DNA #structure #3d #alignment #superposition #bioinformatics #structuralbiology #science #research #PDB #tutorial

Announced: The PDB Molecule of the Month for December is the flagellar motor! An informative article paired with a beautiful artwork by Dr. David Goodsell. https://pdb101.rcsb.org/motm/300 #Science #Discovery #PDB

Since last month, the #wwPDB @PDBeurope considers preprints as publications that trigger release of the corresponding #PDB entries. This is great! It was always frustrating to see new preprints and have to wait for months until being able to look at maps and atomic models.
https://www.wwpdb.org/news/news?year=2024#670d48435697788818ca8c34

#StructuralBiology #CryoEM #crystallography #NMR

Once I'm happy, or I abandoned modeling the last remaining bits of unexplained density or fixing the last subtle model errors in places mostly irrelevant to the biological question the model is meant to answer, then I run `phenix.validation_cryoem` on the half-maps and atomic model. This gives me most of the numbers to put in the refinement table. And I deposit the model into the #PDB and maps into the #EMDB. Fin.

Happy to hear any comments or descriptions of how other people do this!

18/19

This step is important for two reasons. The MD force field will produce a distribution of bond lengths and angles that doesn't quite match the distribution expected by the validation suite run by the #PDB deposition server, so omitting this last refinement will cause many things to be flagged as outliers. The other reason is that #ISOLDE doesn't (yet) refine atomic b-factors, so omitting this last refinement would leave nonsensical b-factors in the model.
15/19

Having identified the proteins, I fetch their #AlphaFold2 predictions from AlphaFold-DB, or compute them if not in the DB. #AF2 models have excellent geometry and complete sequence correctly numbered, so they are excellent starting models. I rarely use #PDB entries as starting models anymore. Rare exceptions: a PDB entry I deposited myself, or one containing a post-translational modification or non-natural amino acid I need (never present in #AF2 models, only the 20 standards amino acids).
4/19

🌘 用GDB通過PDB調試運行中的Python腳本
➤ 如何用GDB和PDB調試正在運行的Python腳本
✤ https://disconnect3d.pl//2024/08/04/debugging-cpython-live/
本文介紹瞭如何使用GDB調試正在運行的Python腳本，透過向Python解釋器進程附加來實現目標。
+ 詳細解釋了在Linux上使用GDB通過PBD來調試正在執行的Python腳本，很具啟發性。
+ 對於想要了解如何在開發中處理已經運行中的程序時有很大幫助。
#Python #調試 #GDB #PDB

#alanine #pymol #pdb
​:blobfoxaww:​