#NucleiSegmentation

CSBJcsbj
2025-11-10

🧬 How can AI bridge the gap between histology and spatial transcriptomics?

🔗 SegDecon bridges histology and transcriptomics through AI-based nuclei segmentation and image-informed spatial deconvolution. Computational and Structural Biotechnology Journal, DOI: doi.org/10.1016/j.csbj.2025.10

📚 CSBJ: csbj.org/

SegDecon bridges histology and transcriptomics through AI-based nuclei segmentation and image-informed spatial deconvolution. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.041
2023-05-24

@gomez_mariscal takes over from Dominik to perform #DeepLearning boosted instance #NucleiSegmentation with @deepImageJ and run superresolution models in @FijiSc, all of them available in @bioimageio 🦒

Arrate Muñoz Barrutia, Daniel Sage, Estibaliz Gómez de Mariscal, Carlos Garcia-López-de-Haro and Wei Ouyang. It shows a screenshot of the paper "DeepImageJ: A user-friendly environment to run deep learning models in ImageJ"Integration of deep learning into bioimage analysis pipelines. It shows the interface of Fiji and the paper "MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ"

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