News in Proteomics Research blog poast | An honest description of a new type of in-cell enrichable lysine crosslinker! https://proteomicsnews.blogspot.com/2025/06/an-honest-description-of-new-type-of-in.html

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#proteomics #prot-other

Azoacetylene Electrophiles for Proteome-wide Ligand and Target Discovery: Supporting Targeted Protein Degradation https://pubs.acs.org/doi/abs/10.1021/acs.jmedchem.5c00229

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Recent advances in chemical proteomics for protein profiling and targeted degradation https://www.sciencedirect.com/science/article/abs/pii/S1367593125000377

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Shaping the Glycan Landscape: Hidden relationships between linkage and ring distortions induced by carbohydrate-active enzymes https://www.biorxiv.org/content/10.1101/2025.06.27.661892v1.full.pdf+html

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#proteomics #prot-preprint

News in Proteomics Research blog post | Staining ancient collagens from fossils? https://proteomicsnews.blogspot.com/2025/06/staining-ancient-collagens-from-fossils.html

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Proteomizer: Leveraging the Transcriptome-Proteome Mismatch to Infer Novel Gene Regulatory Relations https://www.biorxiv.org/content/10.1101/2025.06.22.660946v1.full.pdf+html

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#proteomics #prot-preprint

Development of a method for large-scale single-molecule analysis of tau proteoforms https://www.biorxiv.org/content/10.1101/2025.06.26.660445v1.full.pdf+html

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#proteomics #prot-preprint

Nanoparticle–Protein Corona Boosted Cancer Diagnosis with Proteomic Transfer Learning https://pubs.acs.org/doi/abs/10.1021/acsnano.5c01197

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#proteomics #prot-paper

Recent Advances in Liquid Chromatography–Mass Spectrometry (LC–MS) Applications in Biological and Applied Sciences https://chemistry-europe.onlinelibrary.wiley.com/doi/10.1002/ansa.70024

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#proteomics #prot-paper

A Chemoproteomic Approach for System-Wide and Site-Specific Uncovering of Functional Protein N-Glycosylation https://pubs.acs.org/doi/10.1021/jacs.5c08065

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#proteomics #prot-paper

Optimized protein extraction protocol from human skin samples https://academic.oup.com/biomethods/article/10/1/bpaf035/8128333?login=false

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#proteomics #prot-paper

Multi-stage attention-based extraction and fusion of protein sequence and structural features for protein function prediction https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaf374/8174967?rss=1&login=false

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News in Proteomics Research blog post | Story that I thought was going to be real bad - turned out to be a great one! https://proteomicsnews.blogspot.com/2025/06/story-that-i-thought-was-going-to-be.html

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#proteomics #prot-other

Zero-Shot De Novo Peptide Sequencing with Open Post-Translational Modification Discovery https://www.researchsquare.com/article/rs-6950964/v1

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#proteomics #prot-preprint

A Roadmap for Improving Reliability and Data Sharing in Crosslinking Mass Spectrometry https://www.sciencedirect.com/science/article/pii/S1535947625001239?dgcid=rss_sd_all

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#proteomics #prot-paper

Machine Learning Tool to Analyse Spectroscopic Changes in... https://arxiv.org/abs/2505.06466

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#proteomics #prot-preprint

MassNet: billion-scale AI-friendly mass spectral corpus enables robust de novo peptide sequencing https://www.biorxiv.org/content/10.1101/2025.06.20.660691v1.full.pdf+html

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#proteomics #prot-preprint

Micro-immobilized enzyme reactors for mass spectrometry proteomics https://pubs.rsc.org/en/content/articlelanding/2025/an/d5an00332f

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#proteomics #prot-paper

The AlphaFold Database Ages https://www.biorxiv.org/content/10.1101/2025.06.22.660930v1.full.pdf+html

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#proteomics #prot-preprint

Tissue expansion enables proteomics at improved spatial resolution https://www.cell.com/trends/biochemical-sciences/abstract/S0968-0004(25)00132-X

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#proteomics #prot-paper