Top-Down Scoring of Spectral Fitness by Image Analysis for Protein Structure Validation https://www.biorxiv.org/content/10.1101/2025.05.05.652267v1.full.pdf+html

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#proteomics #prot-preprint

Ultra-High Resolution Solid-State NMR for High Molecular Weight Proteins on GHz-Class Spectrometers https://www.biorxiv.org/content/10.1101/2025.05.05.652283v1.full.pdf+html

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#proteomics #prot-preprint

AlphaFold Database Structure Extractor: A web server and API to download AlphaFold structures using common protein accessions https://www.researchsquare.com/article/rs-6583051/v1

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#proteomics #prot-preprint

Data Independent Acquisition to Inform the Development of Targeted Proteomics Assays Using a Triple Quadrupole Mass Spectrometer https://pubs.acs.org/doi/10.1021/acs.jproteome.5c00016

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#proteomics #prot-paper

Leveraging pretrained deep protein language model to predict peptide collision cross section https://www.nature.com/articles/s42004-025-01540-z

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#proteomics #prot-paper

Discovery of Proteoforms Associated with Alzheimer’s Disease Through Quantitative Top-Down Proteomics https://www.sciencedirect.com/science/article/pii/S1535947625000817?dgcid=rss_sd_all

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#proteomics #prot-paper

Do-It-Yourself De Novo Antibody Sequencing Workflow that Achieves Complete Accuracy of the Variable Regions https://pubs.acs.org/doi/10.1021/acs.jproteome.5c00210

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#proteomics #prot-paper

Two-Step Peptide Solubilization Increases Coverage in High-Sensitivity NanoHILIC/MS/MS-Based Proteomics https://pubs.acs.org/doi/10.1021/acs.analchem.5c00011

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#proteomics #prot-paper

Mitogen-activated protein kinase 4 (MAPK4:p) kinase (MAP2K4:p) kinase (MAP3K4:p) kinase (MAP4K4:p). The naming of these guys reminds me of a conversation I had with a German grad student teaching him French numbering. When we got to the French for "neunzig", he thought I was joking. #proteomics

Quantitative Label-Free Single-Cell Proteomics on the Orbitrap Astral MS https://www.sciencedirect.com/science/article/pii/S1535947625000805?dgcid=rss_sd_all

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#proteomics #prot-paper

mimicDetector: a pipeline for protein motif mimicry detection in host-pathogen systems https://www.biorxiv.org/content/10.1101/2025.05.02.651971v1.full.pdf+html

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#proteomics #prot-preprint

A Streamlined Approach for Mass Spectrometry-Based Proteomics Using Selected Tissue Regions https://app-jove-com.remotexs.ntu.edu.sg/it/t/68076/a-streamlined-approach-for-mass-spectrometry-based-proteomics-using

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#proteomics #prot-other

News in Proteomics Research blog post | 6,500 proteins per (LARGE) mouse cell (oocyte) and studying age related changes! https://proteomicsnews.blogspot.com/2025/05/6500-proteins-per-large-mouse-cell.html

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#proteomics #prot-other

Comparative evaluation of in-depth mass spectrometry and Olink Explore 3072 for plasma proteome profiling https://www.researchsquare.com/article/rs-6501601/v1

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#proteomics #prot-preprint

Limiting the impact of protein leakage in single-cell proteomics https://www.nature.com/articles/s41467-025-56736-7

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#proteomics #prot-paper

News in Proteomics Research blog post | Editors make statement on proteomics transparency AND a video for how to make your data available! https://proteomicsnews.blogspot.com/2025/05/editors-make-statement-on-proteomics.html

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#proteomics #prot-other

Scoring-Assisted Generative Exploration for Proteins (SAGE-Prot):... https://arxiv.org/abs/2505.01277

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#proteomics #prot-preprint

p2smi: A Python Toolkit for Peptide FASTA-to-SMILES Conversion and... https://arxiv.org/abs/2505.00719

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#proteomics #prot-preprint

News in Proteomics Research blog post | Use single cell proteomics (SCP) to add biological relevance to single cell sequencing (scSeq) data! https://proteomicsnews.blogspot.com/2025/05/use-single-cell-proteomics-scp-to-add.html

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#proteomics #prot-other

Small Changes in Big Data: Analyzing Isomers in Bottom-Up Proteomics https://escholarship.org/uc/item/429747st

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#proteomics #prot-other