#Rastermap

Carsen Stringer (she/her)computingnature@neuromatch.social
2024-10-16

📢 #Rastermap paper out now, easily explore and visualize your neural recordings 🐭🐒🐟 and ANNs 🤖 nature.com/articles/s41593-024. Updates from preprint include analyses of primate data and IBL task data.

Video tutorial: youtu.be/oQHq7yUWn2k #Neuroscience #MachineLearning

2023-07-30

wow, this happened within a day of announcing this #OpenSource project! thank you for sharing this @kevinbolding

Congratulations and thank you @computingnature for sharing both the source code for #Rastermap and previous #OpenData

So stoked and look forward to this becoming the norm where scientists don't have to keep reinventing the wheel in their own labs

#neuroscience #AcademicChatter @academicchatter @academicsunite

Carsen Stringer (she/her)computingnature@neuromatch.social
2023-07-29

Excited to see new datasets explored with this! If you have issues, please post an issue on the #Rastermap github: github.com/MouseLand/rastermap.

Carsen Stringer (she/her)computingnature@neuromatch.social
2023-07-29

Learn more on our github: github.com/MouseLand/rastermap. #Rastermap is fast thanks to #python #numpy, #scipy, #numba, and #scikit-learn. The GUI is powered by #pyqt and #pyqtgraph, and supports npz, npy, mat and #nwb ophys files.

Carsen Stringer (she/her)computingnature@neuromatch.social
2023-07-29

#Rastermap sorting of neurons from #ReinforcementLearning agents playing Atari games:

reinforcement learning agents playing atari games
Carsen Stringer (she/her)computingnature@neuromatch.social
2023-07-29

#Rastermap sorting of wholebrain #zebrafish activity from Chen et al, 2018:

zebrafish wholebrain activity during visual stimuli
Carsen Stringer (she/her)computingnature@neuromatch.social
2023-07-29

#Rastermap sorting of #hippocampus data from Grosmark & Buzsaki, 2016:

rat hippocampus activity on linear track
Carsen Stringer (she/her)computingnature@neuromatch.social
2023-07-29

#Rastermap finds movement-related structure in spontaneous activity in complete darkness:

spontaneous neural activity in mouse sensorimotor cortex
Carsen Stringer (she/her)computingnature@neuromatch.social
2023-07-29

#Rastermap finds single-trial sequences of neural activity in a virtual reality experiment:

mouse visual cortical activity during a virtual reality task with two linear corridors
Carsen Stringer (she/her)computingnature@neuromatch.social
2023-07-29

You can explore your data in the graphical user interface: #Rastermap

Carsen Stringer (she/her)computingnature@neuromatch.social
2023-07-29

Make your next discovery using #Rastermap, a visualization method for large-scale neural data in #python. Paper now out: biorxiv.org/content/10.1101/20 (CLICK ON THE GIF) #neuroscience

Client Info

Server: https://mastodon.social
Version: 2025.04
Repository: https://github.com/cyevgeniy/lmst