curation is continuing, and if you really want to see what we do, check this feed of #WikiPathways edits: https://classic.wikipathways.org/index.php/Special:RecentPathwayChanges

I am looking into various simpler fixes from this page: https://www.wikipathways.org/sr24-curation/index2.html

Donations are still welcome! We are only at 820 euro now (the full SR24 is at 2.9 million euro for research into inherited metabolic disorders). Help us, help MetaKids, help the kids with metabolic disorders. https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids

#sr24 #metakids

this is the fourth day of the Serious Request fundraising for #MetaKids of our #WikIPathways action. The DJs locked themselves up in the glass house in the Overijssel city Zwolle yesterday afternoon, the our @wikipathways now raised 730 euro :)

Highlights yesterday include:

- https://mastodon.social/@egonw/113674994239682083
- https://mastodon.social/@egonw/113674323267815212

Today we have the "WikiPathways in actie voor MetaKids" community day, and now heading to #Maastricht University!

#sr24 #metakids

@egonw@social.edu.nl een tweede update. om het makkelijker te maken om prioriteiten te stellen, zijn de curatie testen nu niet meer rood of groen, maar ook geel en oranje, afhankelijk van hoeveel er aan het pathway te verbeteren valt :)

#SR24 #WikiPathways #MetaKids

een eerste update. De eerste donaties zijn binnen (dank!).

De planning gaat goed door. Er is een extra persoon aangesloten, de websites zijn wat bijgewerkt, er is een lijst gemaakt met pathways uit een standaardwerk die we kunnen toevoegen, en ik heb de data curatie pijplijn opgezet: https://www.wikipathways.org/sr24-curation/ (die ook de pathways in #SBML vertaalt)

#WikiPathways #SR24

COVID-19 biological pathways from WikiPathways project

https://www.wikipathways.org/communities/covid19.html

#COVID #CoV #WikiPathways

Post-COVID neuroinflammation (WP5485)

This is a WikiPathways biological pathways diagram. This pathway visualizes the direct and indirect route of SARS-CoV-2-mediated neuroinflammation, which may induce dysautonomia, a major post-COVID symptom. The direct and indirect route are subdivided in a neurological and hematological, and a neurological and humoral route, respectively.

https://www.wikipathways.org/pathways/WP5485.html

#LongCOVID #WikiPathways #neuroinflammation #COVID

new blog post: "CiTO updates: Wakefield and WikiPathways" https://chem-bla-ics.linkedchemistry.info/2024/08/07/cito-updates.html #wikipathways #CiTO #wikidata

your ideas about biological processes can be made FAIR in databases like @wikipathways and @reactome

People are using these pathways in their analyses of biological data, and some of those journal articles cite the specific pathways. #WikiPathways makes a reasonable attempt (particularly given the minimal funding) at tracking that.

I just added another three articles, citing some ~20~ish pathways

For example, https://wikipathways.org/instance/WP1601 has been cited at least 4 times

next week, Denise Slenter will defend her PhD thesis, and in the morning we are organizing a mini symposium With @schymane, @susancoort, Justin van der Hooft, Rachel Cavill, and Laura Steinbusch

If you want to join, you can register here: forms.gle/MsfrRomsiHSk2JPAA #metabolomics #wikipathways #chemistry

obligatory screenshot, and it's fast indeed #QLever #WikiPathways

new preprint: "Community curation of kinetic data to support metabolic models through semantic web technology" https://doi.org/10.5281/zenodo.10418717 #wikipathways #rdf #disorders

De inschrijving voor het VHP4Safety mini-symposium rondom de promotie van Marvin Martens op 29 januari is geopend! https://lnkd.in/dmgHTbUH (Beperkt aantal plaatsen) Met sprekers: Chris Evelo (Marvin's promotor), Holly Mortensen, Anne Kienhuis, Joost Beltman en Mathieu Vinken. #VHP4Safety #AOPWiki #wikipathways

@Marvin's PhD thesis is the result of work in the #OpenRiskNet and #EUToxRisk projects

online via this live stream tomorrow at 16 CET at https://www.youtube.com/watch?v=PkurGEIOufA #wikipathways #wikidata #shex #textmining

mark you calendar! "EpiLipidNET Training School: Data Analysis Techniques for preprocessed Lipidomics data" https://www.maastrichtuniversity.nl/events/epilipidnet-training-school-data-analysis-techniques-preprocessed-lipidomics-data #lipidomics #wikipathways #datascience #EpiLipidNet

Next week Andra Waagmeester (@Andrawaag) will defend his PhD thesis on January 16 on the "Biological Pathway Abstractions: From Two-Dimensional Drawings to Multidimensional Linked Data" (https://www.maastrichtuniversity.nl/events/phd-defence-andra-sachinder-waagmeester). In the morning there will be a mini symposium (see image). Register here today: https://forms.gle/oqMbsVhurBiEQeca7 ! #wikipathways #biology #rdf #wikidata

okay, the `curl` command is not correct yet (after shopping/dinner), but the "Run" and "Edit" links are now working for all SPARQL endpoints :) https://bigcat-um.github.io/PRA3006-SPARQL/wikipathways.html #wikidata #wikipathways #chembl #AOPWiki