Postdoc, HGSC, Baylor college of medicine. Interests: Bioinformatics, SVs, SNVs, comparative genomics, data science, (he/him).
#snakemake v7.29.0 is out . And that's fantastic! Why?
Check out the update on the `--workflow-profile`-directive, here: https://snakemake.readthedocs.io/en/stable/executing/cli.html#profiles . Now, configuring workflows for #HPC clusters is way simpler, no need to edit the workflow any more.
Many thanks to @johanneskoester for his tremendous effort!
@grokin thanks for the meeting!
@gringene that is a good start! I can build upon that.
@gringene thank!!
@gringene so far my aims are to detect novel transcript, SNP calling, an differential expression
Any recommendation for long read #RNA-seq #analysis #pipeline? #bioinformatics
Reminder that my deep learning course at the University of Geneva is entirely available on-line. 1000+ slides, ~20h of screen-casts.
Full of examples in PyTorch
Should I join Mastodon? A scientists’ guide
by
@stokel for @nature
https://www.nature.com/articles/d41586-022-03668-7
That's awesome, thanks for this major effort!
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RT @aphillippy
The #T2T team is excited to release our first draft of a complete, diploid human genome for the @GenomeInABottle benchmark sample, HG002! Links to the data and assembly can be found here: https://github.com/marbl/hg002 🧵
https://twitter.com/aphillippy/status/1590792420731473922
Tychele Turner #biodata22 with "Precision genomics as a key component for the future of precision medicine".
Interested in precision genomics, today focusing on using #PacBio #HiFi to solve unsolved autism case. Workflow involving both assembly- and reference-based processes.
Long reads allowed them to identify and phase a mosaic, de novo variants onto parental strand. Also able to resolve complex translocations in 9p minus syndrome (complex rearrangements shown on screen).
@eberle I see most of the team here !!
Looking forward to delivering the first part of my new tutorial series 'How to read a paper ' with the new #PhD students at the #CRUK Manchester Institute this afternoon.
Session 1 is all about citations - why we cite, how to do it well, and an overview of tools for tracking your reading & references.
The pre-read was this #PlosCompBio paper 'Ten simple rules for responsible referencing' - https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006036
And once I've figured out how I'll post the slides somewhere!
How to migrate from one Mastodon server to another without losing followers:
1. Sign up on new server
2. On NEW server: Go to Account -> Moving FROM another account
3. Enter old account's handle
4. On OLD server: Go to Account -> Moving TO another account
5. Enter new account's handle and submit
Hi! #bioinformatics #introduction I'm Medhat, senior postdoc #HGSC @Baylor interested in #comperativegenomics #SVs #SNVs #LongReads developing frameworks for comprehensive genome analysis.
