Happy to have contributed to the #protists section of this #ERGA whitepaper 👉 From Permits to Samples: Addressing Key Challenges for High-Quality Reference Genome Generation in Europe https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.70100
#ERGA
At PCI Genomics, we are pleased to have recommended all ERGA manuscripts and publications to date, helping to bring together this vital body of work at the heart of European biodiversity genomics.
We look forward to continuing to highlight future ERGA outputs, supporting open, collaborative science for conservation and beyond.
🔗 https://genomics.peercommunityin.org/
#ERGA #Genomics #Biodiversity #PCIGenomics #OpenScience
Lopezguerra & Douglas recommend the high-quality Xylocopa violacea reference genome by Nash et al., 2024, Heredity, the first annotated pseudo-chromosomal assembly for any Xylocopa bee! 🐝 A crucial step for pollinator research, conservation, and even cancer therapy studies #ERGA
https://bsky.app/profile/ergabiodiv.bsky.social/post/3lfowcifc5c2w
Did you know you can follow #ERGA updates across different social networks and channels? 🌍 Choose your favorites and stay connected!
TODAY ERGA BioGenome Analysis and Applications Seminar,
Wednesday, December 11th, at 11:00 AM CET.
Susana Coelho and Jaruwatana Sodai Lotharukpong will present a talk titled "Evolutionary Transcriptomics in Brown Algae," sharing recent findings on a transcriptomic hourglass and addressing bioinformatic challenges and solutions when working with non-model organisms.
https://www.youtube.com/watch?v=bobCLEJlL1w
#Genomics #biodiversity #ERGA
I have a couple of questions about submitting genomes to NCBI: we assembled a chromosome-level genome starting from an already public draft assembly, which was not on NCBI. We want to publish our new version, though. In that case:
1. should we submit as "third-party", because part of the data is not ours?
2. is it ok to submit a gene annotation, if we didn't create it ourselves and just "lifted" it from the old one assembly?
Thanks!
Discover our new video about ERGA, now available on YouTube: https://youtu.be/kYL9Pkp6Bbs?si=9KmcLHELLmnsftsl
#ERGA #genomics #biodiversity #conservation
💡 Curious about the #ERGA Knowledge Hub & how you can contribute & benefit from it?
Watch this introduction ==> https://www.youtube.com/watch?v=TOnHMfJ2Mnw
#genomes for #biodiversity #training #bioinformatics #KnowledgeTransfer @erga_biodiv @SIB
#ERGABlog | ERGA and VGP were present at this year's @galaxyproject community conference #GCC2024 to demonstrate how Galaxy fits into a distributed and community-driven model of reference #genome generation
Read more ➡ https://www.erga-biodiversity.eu/post/erga-and-vgp-at-the-galaxy-community-meeting-2024
Want to learn more about how #ERGA is using #Galaxy and other platforms to develop standards for reference genome generation as #community? Check the poster and slides presented at #GCC2024:
🔹 https://f1000research.com/posters/13-725
🔹 https://f1000research.com/slides/13-726
Are you attending the @galaxyproject Community conference this week in Brno? 🇨🇿 #GCC2024
Find #ERGA at poster #10 and discover how we are working together as a community to develop standards for reference genome #assembly & #annotation 🧬
#ERGABlog | This month we asked Alice Mouton 5⃣ questions about the #ERGA #Training and #Knowledge Transfer Committee.
Read the interview to learn how this committee aims to support biodiversity genomics capacity building across Europe ➡️ https://www.erga-biodiversity.eu/post/5-questions-to-alice-mouton-chair-of-the-training-knowledge-transfer-committee
#ERGABlog | Check this new interview with @AliceDennis to learn about her views on the critical process of genome #annotation, the need to sequence more diverse #genomes and her vision for the #ERGA Annotation Committee
https://www.erga-biodiversity.eu/post/5-questions-to-alice-dennis-chair-of-the-annotation-committee
⁉️ How can #genomics inform #conservation practices in a changing world?
Don't miss the talks by Orly Razgour & Chris Barratt tomorrow at 11:00 CET to learn more about this important topic!
❔How can we tackle the complex challenge of sampling all life on Earth for reference #genome sequencing?
We asked this and other questions to Torsten Struck, chair of the #ERGA Sampling & Sample Processing Committee
Read the full interview 👉 https://www.erga-biodiversity.eu/post/5-questions-to-torsten-struck-chair-of-the-sampling-sample-processing-committee
What is the #European #Reference #Genome #Atlas?
🔹 We are an open network of over 1000 scientists & the European node of the Earth BioGenome Project
🔹 #ERGA is all about connecting people and institutions to advance #biodiversity #genomics in Europe 🌍
👉 erga-biodiversity.eu/
The Earlham Institute @earlhaminst has been a crucial #ERGA partner since our #PilotProject, sequencing species from various taxonomic groups 🐟🌿🍄🐝
Thank you for all the collaborative work and for this great new article 👏
https://www.earlham.ac.uk/articles/fish-fungus-grass-bee-and-brassica
The first #ERGA newsletter of 2024 is out! 📰🗞️
A good opportunity to catch up with the latest activities of our committees and projects.
➡️ https://www.erga-biodiversity.eu/blog/categories/erganews
Biodiversity Genomics Europe Earth BioGenome Project
Our monthly Plenaries are the meeting point for the whole #ERGA Community.
Ready to join the conversation and stay updated? Become an ERGA member now! 👉 https://erga-biodiversity.eu/join-contact
Thanks to Ensembl, all ERGA Pilot Project genomes will be annotated and published openly for all to use 👏
Check out the #ERGA Pilot page in Ensembl's website for access to genomes, annotations and interactive browsers 🧬🖥️ https://projects.ensembl.org/erga-pilot/
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