🧬 Want to explore your own genome?
Join our free webinar on how to use OpenCRAVAT to annotate & interpret your personal variants.
📅 July 10 | 🕐 1 PM EDT
🎙️ With Jasmine Baker, PhD & Rachel Karchin, PhD
🔗 https://tinyurl.com/3ur6vv35
#Genomics #Bioinformatics #OpenSource #OpenCRAVAT
🧬 Curious about your genome?
Join our free webinar on OpenCRAVAT to explore and annotate your own data!
📅 July 10 – 1 PM EDT
🎙️ Baker & Karchin (JHU)
🔗 https://tinyurl.com/3ur6vv35
#Genomics #Bioinformatics #OpenScience
#annotator #opencravat #bioinformatics #opensource #webinar #genomes 🖥🧪
Discover the power of OpenCRAVAT's cutting-edge annotation features that ensure seamless collaboration among users. Its intuitive design makes it easy for everyone to navigate, while enhancing productivity across the board. Whether you're a beginner or a seasoned pro, OpenCRAVAT opens up a world of possibilities, making your workflow smoother and more efficient.#annotator #opencravat #bioinformatics #opensource #genomics
Discover the power of the All of Us annotator with Open Cravat! This tool leverages the vast allele frequency data from the All of Us Research Program, offering insights into genetic variations across diverse populations. By using this annotator, researchers can delve into non-European genetic diversity and advance precision medicine. Let's drive innovation in healthcare together! #PrecisionMedicine #Genomics #AllOfUs #OpenCravat#annotator #bioinformatics #opensource
Do you have research goals for 2025!? We'd love to hear them! #annotation #OpenCRAVAT #2025 🧪🖥
🧬 New Blog by Dr. Rachel Karchin!
Dr. Karchin shares how OpenCRAVAT and CIViC are addressing transparency and interpretability in variant effect predictors. Discover how calibrated predictors are transforming clinical variant classification.
🔗 Read the full post: https://www.opencravat.org/variant-effect-predictors-in-the-clinic-working-with-calibrated-predictors-in-opencravat/
What are your thoughts on the new ACMG/AMP framework integration? Let us know below!
#Genomics #VariantAnnotation #OpenCRAVAT 🖥️
🌐 On the 10th day of #OpenCRAVAT, my workflow gave to me…
✨ Powerful API Capabilities!
Integrate OpenCRAVAT into pipelines: submit jobs, check statuses, and fetch custom reports programmatically.
Explore the API docs: https://docs.opencravat.org/en/latest/API.html
#12DaysofOpenCRAVAT #Genomics
☁️ Day 9 of #OpenCRAVAT: Run on the Cloud!
No hardware limits, no delays—just efficient genomic analysis anywhere. Learn how to set up OpenCRAVAT on the cloud today.
🔗Cloud Usage: https://docs.opencravat.org/en/latest/Cloud.html
#12DaysofOpenCRAVAT #CloudComputing 🖥️ 🧬 #Genomics #Variants
🔎 Day 8 of #OpenCRAVAT: Eight Data Filtering Options!
Refine your results with precision: filter by gene, variant type, pathogenicity score, or population frequency.
Which filter is most useful for your research? Comment below!
🔗Filtering Tutorial: https://docs.opencravat.org/en/latest/Filter-Tutorial.html
#12DaysofOpenCRAVAT #VariantAnalysis 🧬 🖥️
🌟 On the 6th day of #OpenCRAVAT, my database gave to me…Six Gene-Level Insights!
Which insight is most valuable for your research? CHASMplus, REVEL, PolyPhen-2, gnomAD, ClinVar, or COSMIC?
Explore OpenCRAVAT at opencravat.org
On the 5th day of #OpenCRAVAT, my platform gave to me…
✨ Five Tips for New Users!
New to OpenCRAVAT? Check out the links in this thread. Got questions? Comment below!
🔗 Creating an OC account (web) https://docs.opencravat.org/en/latest/getting_started_web.html#creating-an-opencravat-account-web
#12DaysofOpenCRAVAT #Genomics #OpenData #Variants #Annotation
❄️ On the 4th day of #OpenCRAVAT, my workflow gave to me…
Four Annotation Sources!
Discover how gnomAD4, dbSNP, ClinVar, and COSMIC make your variant analysis powerful. Which do you rely on most?
Link to full list of annotators: https://buff.ly/3OF6sLD
✨ On the 3rd day of #OpenCRAVAT, my tools gave to me…
🎄 Three Custom Report Options!
Choose from TXT, Excel, or Sqlite outputs to fit your workflow. Which report type is your favorite? Reply below!
🔗https://docs.opencravat.org/en/latest/3.-Viewing-Results.html#downloadable-reports
🔗https://docs.opencravat.org/en/latest/3.-Viewing-Results.html#viewing-results
#12DaysofOpenCRAVAT #Genomics #VariantAnalysis
🎁 On the 2nd day of #OpenCRAVAT, my software gave to me…
✨ Two New Example Inputs!
Test OpenCRAVAT with hgvs and dbsnp inputs. Perfect for trying the software before running your data!
🔗https://buff.ly/3BapIgP & https://buff.ly/49l5yNJ
#12DaysofOpenCRAVAT #VariantAnnotation
🎄 On the 1st day of #OpenCRAVAT, my analysis gave to me…
✨ A Single Variant Tool for Free!
Quickly annotate any genomic variant right from the new OpenCRAVAT website. Try it now and simplify your workflows!
https://www.opencravat.org/ https://run.opencravat.org/webapps/variantreport/index.html
🌐 Exciting news! OpenCRAVAT has a brand-new website AND logo 🎉. Check it out at https://opencravat.org.
🧬 Explore our Single Variant Tool directly on the landing page—annotate a single variant with ease and see how OpenCRAVAT simplifies genomic analysis! 🚀
Let us know your thoughts! #Genomics #VariantAnalysis #OpenCRAVAT
Check out our YouTube tutorials!
📢 Exciting news! OpenCRAVAT v2.9.0 is out now!
What's new?
Added hgvs & dbsnp example inputs
Improved Single Variant Report inputs
Enhanced oc new example-input command to support more input types
#Genomics #Bioinformatics #OpenCRAVAT
🚀 gnomAD v4 is now available on OpenCRAVAT! 🎉 Update your genomic analysis workflows with the latest variant data. #Genomics #Bioinformatics #OpenCRAVAT #gnomADv4
Please visit us at ISMB 2024! We are poster 449. https://iscb.junolive.co/ISMB24/live/exhibitor/ismb2024_poster_449
