Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1
#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
Here's an experiment with prompting #Claude to write a #llm - powered #TEI #annotation pipeline with #evaluation. I also prompted it to run an experiment to compare the performance of Gemini 2.0 Flash vs. Llama 3.3 70b (via saia.gwdg.de) when annotating <tei:bibl> elements.
https://github.com/cboulanger/tei-annotator
https://github.com/cboulanger/tei-annotator/blob/main/docs/batch-annotation-experiment.md
Very early stage, but promising results so far. Don't want to reinvent the wheel though - what other projects (besides #Grobid) engage in LLM/ML-based TEI annotation?
Added a neat little feature in iScribby (v0.0.10) - the ability to attach your drawings to any window you choose. This is a bit of an experimental feature. Let me know if I should keep it!
https://iscribby.com/changelog
#dotnet #annotation #software #devlog #productivity #drawing #windows
We are looking to extend the @CATMA_app development team! This is an E13, full-time position for 36 months and relates to the ongoing development of our open source annotation tool.
The focus of the development work is on extending the API, separating frontend and backend, and implementing a modern, redesigned GUI.
Become part of the 3-person dev team! Details here: https://www.career.tu-darmstadt.de/tu-darmstadt/job/53175
#DigitalHumanities #DH #DHd #ResearchSoftware #CATMA #Annotation #RSE #DHTech #DHTools (1/2)
Ed Zitron loses his mind annotating an AI doomer macro memo
#HackerNews #EdZitron #AI #Dilemma #DoomerMemo #Annotation #TechCritique
Would you like to share annotations in ebooks? Check out this proposal
https://www.w3.org/news/2026/first-public-working-draft-and-supporting-notes-epub-annotations-1-0/
Come work with us! Das @forTEXT lab sucht Verstärkung für @CATMA_app
Die Stelle (E13, 100%, 3 Jahre) wird Teil des dreiköpfigen Entwicklungsteams:
https://www.career.tu-darmstadt.de/tu-darmstadt/job/53175
Bewerbungsschluss ist der 16.03.! Gerne weitersagen…
#DigitalHumanities #ResearchSoftware #CATMA #Annotation
Wenn du in Java schon ein paar Klassen geschrieben hast, bist du Annotationen ziemlich sicher begegnet: @Override, @SuppressWarnings, vielleicht auch @Deprecated. Am Anfang wirken die Dinger wie „Meta-Kram“, den man halt drüber schreibt. In Wahrheit sind Annotationen ein sehr pragmatisches Werk
https://magicmarcy.de/java-annotationen-selber-bauen
#Annotation #Java #Reflection #Dispatcher #CommandDispatcher #Metadaten #Mapping #Programming
Introduced another neat feature in iScribby (v0.0.9). You can now change the size and opacity of your images. Quite useful when you want to trace a drawing or have a reference nearby.
https://iscribby.com/changelog
#dotnet #annotation #software #devlog #productivity #drawing #windows
Pipeline release! nf-core/sarek v3.8.1 - 3.8.1 - Laitaure!
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.8.1
#annotation #cancer #gatk4 #genomics #germline #preprocessing #somatic #targetpanels #variantcalling #wholeexomesequencing #wholegenomesequencing #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/sarek v3.8.0 - 3.8.0 - Sitojaure!
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.8.0
#annotation #cancer #gatk4 #genomics #germline #preprocessing #somatic #targetpanels #variantcalling #wholeexomesequencing #wholegenomesequencing #nfcore #openscience #nextflow #bioinformatics
Cooked up an another neat feature in 0.0.8 version of iScribby. You can now copy and paste images in using the marquee tool.
https://iscribby.com/changelog
#dotnet #annotation #avaloniaui #software #devlog #productivity #productivitytools #drawing
Pipeline release! nf-core/proteinannotator v1.0.0 - Yellow Saiga!
Generation of sequence-level annotations for amino acid sequences
Please see the changelog: https://github.com/nf-core/proteinannotator/releases/tag/1.0.0
#annotation #proteomics #nfcore #openscience #nextflow #bioinformatics
François Chollet (@fchollet)
비검증(non-verifiable) 도메인에서는 현재 AI 성능을 향상시키려면 더 많은 주석(annotated) 훈련 데이터를 큐레이션하는 방법뿐이며 이는 비용이 많이 들고 개선 효과는 로그적이라는 주장입니다. 또한 거의 모든 직무에 비검증 요소가 포함되어 있다는 점을 지적합니다. (데이터·학습 한계 관련 통찰)
Pipeline release! nf-core/mag v5.4.0 - mag 5.4.0 - Yellow Frog!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.0
#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
Another batch of juicy features in 0.0.7 version of iScribby. You can now draw basic shapes on your screen like arrows, circles, squares and straight lines.
https://iscribby.com/changelog
#dotnet #annotation #avaloniaui #software #devlog #productivity #productivitytools #drawing
Ultralytics (@ultralytics)
MobileSAM과 검출 모델을 결합해 분할(segmentation) 데이터셋을 자동 주석(automatic annotation)하는 워크플로를 소개. 검출 모델로 객체를 찾고 MobileSAM으로 고품질 분할 마스크를 자동 생성해 데이터셋 제작을 가속화하고 수작업 라벨링 부담을 크게 줄일 수 있다고 설명함.
https://x.com/ultralytics/status/2013300450674475495
#mobilesam #segmentation #dataset #annotation #computervision
[metacode - 액션 코멘트 표준화를 위한 선언적 주석 언어와 파서
Metacode는 Python 생태계에서 다양한 도구들이 사용하는 특수 주석을 표준화하기 위한 선언적 주석 언어와 파서를 제안합니다. 이를 통해 액션 코멘트의 혼란을 해소하고, 주석의 구조화와 효율적인 처리를 지원합니다. 이 라이브러리는 주석의 표준화, 여러 도구에 대한 주석의 동시 처리, 선택적 파싱 기능 등을 포함하며, 타 언어로의 확장도 가능합니다.
Another delicious feature in 0.0.6 version of iScribby. You can now set a background - draw on a blackboard, whiteboard or a semi-transparent overlay if needed.
https://iscribby.com/changelog
#dotnet #annotation #avaloniaui #software #devlog #productivity
Added a new juicy feature in 0.0.5 version of iScribby. You can now customize every single shortcut that's available.
https://iscribby.com/changelog
#dotnet #annotation #avaloniaui #software #devlog #productivity
