The intruders that stole the master key https://doi.org/10.1038/s41579-025-01158-x
#microbiology #bioinformatics

Taxometer: Improving taxonomic classification of metagenomics contigs
https://doi.org/10.1038/s41467-024-52771-y
#microbiology #bioinformatics

Some scientists have it more fun than others... ;)

https://github.com/fastqe/fastqe

#Python #Bioinformatics #SequenceAlignment #DNA #science

CUDASW++4.0: ultra-fast GPU-based Smith–Waterman protein sequence database search
doi.org/10.1186/s12859-024-05965-6
#bioinformatics

A long-context language model for deciphering and generating bacteriophage genomes
https://doi.org/10.1038/s41467-024-53759-4
#microbiology #bioinformatics

The role of noncoding RNAs in bacterial immunity
https://doi.org/10.1016/j.tim.2024.09.006
#microbiology #bioinformatics

Strain-resolved de-novo metagenomic assembly of viral genomes and microbial 16S rRNAs
https://doi.org/10.1186/s40168-024-01904-y
#bioinformatics #microbiology

#ISEPpapers 25: July, August, and September 2024 https://www.isep-protists.com/post/iseppapers-25

Your twenty-fifth digest of papers and preprints published by members of the International Society for Evolutionary Protistology is here!

#protists #algae #parasites #microbes #evolution #biology

De Novo Emerged Gene Search in Eukaryotes with DENSE
https://doi.org/10.1093/gbe/evae159
#microbiology #bioinformatics

Bacteria modulate microalgal aging physiology through the induction of extracellular vesicle production to remove harmful metabolites
https://doi.org/10.1038/s41564-024-01746-2
#microbiology #bioinformatics

Fairy: fast approximate coverage for multi-sample metagenomic binning
https://doi.org/10.1186/s40168-024-01861-6
#microbiology #bioinformatics

🚀𝗔𝗻𝗻𝗼𝘂𝗻𝗰𝗶𝗻𝗴 𝗚𝗕𝗖𝗖 𝟮𝟬𝟮𝟱: 𝗧𝗵𝗲 𝟭𝘀𝘁 𝗷𝗼𝗶𝗻𝘁 𝗰𝗼𝗻𝗳𝗲𝗿𝗲𝗻𝗰𝗲 𝗯𝗲𝘁𝘄𝗲𝗲𝗻 𝗕𝗶𝗼𝗰𝗼𝗻𝗱𝘂𝗰𝘁𝗼𝗿 & 𝗚𝗮𝗹𝗮𝘅𝘆!

Join us June 23-26 at Cold Spring Harbor for workshops, talks, and more. Stay tuned for updates, including a logo contest! Read more in our shared blog post: https://blog.bioconductor.org/posts/2024-09-03-gbcc2025-announcement/

#GBCC2025 #Bioconductor #Galaxy #Bioinformatics #Genomics #DataScience

Global distribution, diversity, and ecological niche of Picozoa, a widespread and enigmatic marine protist lineage
https://doi.org/10.1186/s40168-024-01874-1
#microbiology #bioinformatics

Cross-biome microbial networks reveal functional redundancy and suggest genome reduction through functional complementarity
https://doi.org/10.1038/s42003-024-06616-5
#microbiology #bioinformatics

MIT leaders describe the experience of not renewing its largest journal contract as overwhelmingly positive
https://sparcopen.org/our-work/big-deal-knowledge-base/unbundling-profiles/mit-libraries/

A k-mer-Based Approach for Phylogenetic Classification of Taxa in Environmental Genomic Data
https://doi.org/10.1093/sysbio/syad037
#microbiology #bioinformatics

Extreme mitochondrial reduction in a novel group of free-living metamonads
https://doi.org/10.1038/s41467-024-50991-w
#microbiology #bioinformatics

Unravelling the genomic and environmental diversity of the ubiquitous Solirubrobacter
https://doi.org/10.1111/1462-2920.16685
#microbiology #bioinformatics

Accurate prediction of protein function using statistics-informed graph networks https://doi.org/10.1038/s41467-024-50955-0 #microbiology #bioinformatics

PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era https://doi.org/10.1093/molbev/msae150 #microbiology #bioinformatics