@nfdi4bioimage started the new year with enthusiasm and many plans, and you'll find what's new, what's upcoming, and what's to read or review in our latest newsletter.
Take a look to find out about the latest developments within the @NFDI and get an overview of upcoming conferences, workshops, and publications related to #bioimaging research data management for the upcoming year.
📨 https://nfdi4bioimage.de/community-integration/newsletter/#c896618
Job Alert
PhD Candidate (m/f/d)
Deadline: 2026-02-02
Location: Germany - Dortmund
https://www.academiceurope.com/ads/phd-candidate-m-f-d/
#hiring #PhD #CardiovascularResearch #Immunology #Bioimaging #naturalsciences #biology #biochemistry #LifeSciences
🖼️🎥 New to BIIGLE? Join the BIIGLE4Beginners Workshop!
🗓️ Dec 11, 2025 | 14:00–16:00 CET | 🌐 Online
Learn end-to-end image & video annotation from #BioImaging – perfect for newcomers!
Register: https://www.denbi.de/training-courses-2025/1984-biigle4beginners-december-workshop-2025
#BIIGLE #ImageAnnotation #VideoAnnotation
🧬 How can AI bridge the gap between histology and spatial transcriptomics?
🔗 SegDecon bridges histology and transcriptomics through AI-based nuclei segmentation and image-informed spatial deconvolution. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.041
📚 CSBJ: https://www.csbj.org/
#SpatialTranscriptomics #Histology #Genomics #SystemsBiology #NucleiSegmentation #AI #CellBiology #TissueBiology #Bioimaging
New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html
@galaxyproject
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools
New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html
@galaxyfreiburg
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools
On Day 2 of European Galaxy Days, Beatriz Serrano-Solano presented Update by the Imaging Community.
Read more: https://galaxyproject.org/community/sig/image-analysis/
@galaxyfreiburg
#imaging_community #bioimaging #EGD2025 #galaxyproject #eosc #fair #community #open_science
Amazing talk by Björn Grüning from @galaxyfreiburg at @unifreiburg and task area leader @nfdi4bioimage on the power of #Galaxy at #CoRDI2025. Cloud-deployed workflows as a basis for reuse across domains.
An example? Voronoi segmentation in #bioimaging, forest imagery & astronomy. 👏
Interested in the intersection of #bioimaging and #datascience?
The "Bio-Image Data Science Lectures 2025 @unileipzig / ScaDS.AI Dresden/Leipzig developed by @haesleinhuepf, provide theoretical foundations and practical skills — including #Python programming, #machinelearning, #deeplearning, #LLMs, research data, and software management. Structured over several months, the material is perfect for students, researchers, and #selfstudy.
Wir haben #Omero in die Testphase an der #GoetheUniversität und erproben nun den Betrieb 💪 #Forschungsdaten #Bioimaging #ResearchData #GoetheUniversity https://www.ub.uni-frankfurt.de/forschungsdaten/omero.html
From Josh Moore, German Bioimaging research software engineer and OME and Zarr developer and maintainer:
🚀 We’re hiring again! Join German BioImaging as a Software Developer!
💻 Build scalable #bioimaging solutions
🌍 Collaborate globally
🎯 Contribute to open science through #OME #Zarr
📣 Tell your #NGFF friends.
Remote, full-time. Apply by 30 June 2025. All submissions via:
https://gerbi-gmb.de/machform/view.php?id=86038
📨 Find out what's new, what's upcoming and what's to read or review in the second issue of the @nfdi4bioimage newsletter 2025.
We have compiled our latest conference contributions and activities as well as exciting publications from the field of #BioImaging for you.
Find out at which upcoming events we will be represented with lectures, posters and workshops and where we can meet to exchange ideas.
👉 https://nfdi4bioimage.de/community-integration/newsletter/
Job - Alert 🌱
Scientist / Postdoc (m/f/d): Bioimaging
Deadline: 2025-07-11
Location: Germany, Dortmund, Nordrhein Westfalen
https://www.academiceurope.com/ads/scientist-postdoc-m-f-d-bioimaging/
#hiring #Bioimaging #Postdoc #LifeSciences #Rheumatology #Biology #Biochemistry #Biotechnology
🚀 We’re hiring again! Join @GerBI as a Software Developer!
💻 Build scalable #bioimaging solutions
🌍 Collaborate globally
🎯 Contribute to open science through #OME #Zarr
📣 Tell your #NGFF friends.
Remote, full-time. Apply by 30 June 2025: All submissions via http://bit.ly/gerbi-jobs-202505
As #OMERO continues to serve as a powerful research data management system, the #bioimaging community is increasingly working with large, complex multimodal datasets that present new visualization challenges. To meet this growing need, Michele Bortolomeazzi, Christian Schmidt and Jan-Philipp Mallm at @nfdi4bioimage have developed a new OMERO-web plugin: OMERO-vitessce.
Find the poster here: https://zenodo.org/records/14832855
Today at #ELMI2025, @joshmoore presented the #Bioimaging community's immense efforts to pave the way to OME-Zarr 1.0 - Stable cloud-readiness for bioimage data is getting real.
The slides of his talk "The road to OME-Zarr 1.0: A FAIR future for bioimaging" are available in Zenodo:
The first poster session of #ELMI2025 which took place on Helix A last night, provided an ideal setting to exchange ideas with friends and colleagues about #bioimaging and #rdm.
Exciting projects were presented by @nfdi4bioimage including OMERO-vitessce and the IO-FAST initiative. Our data stewards were also on site, ready to offer advice on bioimaging #datamanagement.
Today, we will continue with talks, workshops, and the second poster session. We look forward to more inspiring talks! 🔬
In Ep 12 of #spotLights, Jonathan Townson talks to Daniel Booth about his lab's recent #preprints (cell division mechanisms & new bioimaging tools), presented at #biologists100. One was recently published @J_Cell_Sci !
They also explore the value of preprinting for early-career PIs and their teams.
Listen below ⬇️ 🎧
https://youtu.be/Uk5EBqmfFhY
#podcast #CellBiology #Bioimaging #OpenScience #preprints #biology #interview
#MeetOurDataStewards: The NFDI4BIOIMAGE Community Support Taskorce 👨💻
No matter your research field, @nfdi4bioimage supports you in managing imaging #data. This process requires not only time and expertise, but also specialists who understand #bioimaging data.
Over the next few months, we will introduce one expert from our Data Steward team each month. We look forward to sharing their exciting projects, publications, and helpful tips with you.
Data Stewards overview: https://nfdi4bioimage.de/about-us/data-stewardship-team/
Efficient, standards-based #bioimaging data management is essential for research and data reuse. Join @nfdi4bioimage's presentation about “A Journey to #FAIR Bioimage Data,” a contribution to @ells_heidelberg's STANDFLOW project webinar series:
🗓️July 2, 2025 | 02:30–03:30 pm | Online & Free
✅ Local data management: #OMERO & beyond
✅ Annotation: metadata, ontologies, REMBI
✅ Linking images with protocols & results
✅ Cloud storage: ome.zarr
✅ Data publication
👉 Register: https://www.ebi.ac.uk/training/events/journey-fair-bioimage-data/NFDI4B
