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Interested in the intersection of #bioimaging and #datascience?

The "Bio-Image Data Science Lectures 2025 @unileipzig / ScaDS.AI Dresden/Leipzig developed by @haesleinhuepf, provide theoretical foundations and practical skills — including #Python programming, #machinelearning, #deeplearning, #LLMs, research data, and software management. Structured over several months, the material is perfect for students, researchers, and #selfstudy.

📝 https://zenodo.org/records/15858127

Wir haben #Omero in die Testphase an der #GoetheUniversität und erproben nun den Betrieb 💪 #Forschungsdaten #Bioimaging #ResearchData #GoetheUniversity https://www.ub.uni-frankfurt.de/forschungsdaten/omero.html

From Josh Moore, German Bioimaging research software engineer and OME and Zarr developer and maintainer:

🚀 We’re hiring again! Join German BioImaging as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025. All submissions via:
https://gerbi-gmb.de/machform/view.php?id=86038

📨 Find out what's new, what's upcoming and what's to read or review in the second issue of the @nfdi4bioimage newsletter 2025.
We have compiled our latest conference contributions and activities as well as exciting publications from the field of #BioImaging for you.
Find out at which upcoming events we will be represented with lectures, posters and workshops and where we can meet to exchange ideas.
👉 https://nfdi4bioimage.de/community-integration/newsletter/

Job - Alert 🌱

Scientist / Postdoc (m/f/d): Bioimaging

Deadline: 2025-07-11

Location: Germany, Dortmund, Nordrhein Westfalen

https://www.academiceurope.com/ads/scientist-postdoc-m-f-d-bioimaging/

#hiring #Bioimaging #Postdoc #LifeSciences #Rheumatology #Biology #Biochemistry #Biotechnology

🚀 We’re hiring again! Join @GerBI as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025: All submissions via http://bit.ly/gerbi-jobs-202505

#getfedihired

https://gerbi-gmb.de/resources/career/

As #OMERO continues to serve as a powerful research data management system, the #bioimaging community is increasingly working with large, complex multimodal datasets that present new visualization challenges. To meet this growing need, Michele Bortolomeazzi, Christian Schmidt and Jan-Philipp Mallm at @nfdi4bioimage have developed a new OMERO-web plugin: OMERO-vitessce.

Find the poster here: https://zenodo.org/records/14832855

Today at #ELMI2025, @joshmoore presented the #Bioimaging community's immense efforts to pave the way to OME-Zarr 1.0 - Stable cloud-readiness for bioimage data is getting real.

The slides of his talk "The road to OME-Zarr 1.0: A FAIR future for bioimaging" are available in Zenodo:

👉 https://zenodo.org/records/15597856

@GerBI

The first poster session of #ELMI2025 which took place on Helix A last night, provided an ideal setting to exchange ideas with friends and colleagues about #bioimaging and #rdm.

Exciting projects were presented by @nfdi4bioimage including OMERO-vitessce and the IO-FAST initiative. Our data stewards were also on site, ready to offer advice on bioimaging #datamanagement.

Today, we will continue with talks, workshops, and the second poster session. We look forward to more inspiring talks! 🔬

In Ep 12 of #spotLights, Jonathan Townson talks to Daniel Booth about his lab's recent #preprints (cell division mechanisms & new bioimaging tools), presented at #biologists100. One was recently published @J_Cell_Sci !

They also explore the value of preprinting for early-career PIs and their teams.

Listen below ⬇️ 🎧
https://youtu.be/Uk5EBqmfFhY

#podcast #CellBiology #Bioimaging #OpenScience #preprints #biology #interview

#MeetOurDataStewards: The NFDI4BIOIMAGE Community Support Taskorce 👨‍💻

No matter your research field, @nfdi4bioimage supports you in managing imaging #data. This process requires not only time and expertise, but also specialists who understand #bioimaging data.

Over the next few months, we will introduce one expert from our Data Steward team each month. We look forward to sharing their exciting projects, publications, and helpful tips with you.

Data Stewards overview: https://nfdi4bioimage.de/about-us/data-stewardship-team/

Efficient, standards-based #bioimaging data management is essential for research and data reuse. Join @nfdi4bioimage's presentation about “A Journey to #FAIR Bioimage Data,” a contribution to @ells_heidelberg's STANDFLOW project webinar series:

🗓️July 2, 2025 | 02:30–03:30 pm | Online & Free

✅ Local data management: #OMERO & beyond
✅ Annotation: metadata, ontologies, REMBI
✅ Linking images with protocols & results
✅ Cloud storage: ome.zarr
✅ Data publication

👉 Register: https://www.ebi.ac.uk/training/events/journey-fair-bioimage-data/NFDI4B

It was a pleasure to be a speaker at the "Shaping light in space and time for bioimaging" Ph.D. school in Erice! Met a selection of amazing scientists, and had a lot of fun discussing imaging and optics in a great location! #bioimaging #optics

An image of me presenting a slide about oblique plane microscopy in front of the school audience

A group picture of the school partecipants during an excursion at the Segesta theater archeological site. I can be spotted in a very bright orange t-shirt in the center.

The high degree of heterogeneity in #bioimaging #metadata makes collaboration difficult and often leads to the loss of relevant metadata. In the presentation “Bioimaging Metadata”, which our @nfdi4bioimage colleagues Susanne Kunis and @joshmoore gave a few weeks ago, they discuss the reasons for this heterogeneity and which standards can be used to work towards loss-free and reusable metadata.

They have posted their slides on Zenodo:
👉 https://zenodo.org/records/15083018

@nfdi4bioimage experts will share best practices for #FAIR #bioimaging data in the webinar series "How to organise and share my imaging data?" from May 14 to July 2, 2025, organised by the STANDFLOW project and supported by @emblebi. 🌊

➡️ May 28: Towards Open and Standardized Imaging Data: An Introduction to Bio-Formats, OME-TIFF, and OME-Zarr | @joshmoore

➡️ July 2: A journey to FAIR bioimage data | Christian Schmidt, Tom Boissonnet, Stefanie Weidtkamp-Peters

👉 https://www.ebi.ac.uk/training/events/how-organise-and-share-my-imaging-data/

🎥 The HortiQD 1st Webinar recording is now online!
Explore the journey of quantum dots from bioimaging tools to high-performance materials in displays, lighting & sensing.

🔗 Watch here: https://www.youtube.com/watch?v=hgGpE6GNWx4
#QuantumDots #Nanotech #Photonics #Bioimaging #Webinar #HortiQD

If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis

Open Source Bioimage Analysis ...

Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis