#ImageAnalysis

2025-11-03

I have two open positions in my lab at the Advanced Light Microscopy Unit Centre for Genomic Regulation (CRG):

- Imaging Scientist (permanent position. Deadline 11th Nov.) recruitment.crg.eu/content/job

- Entry-Level Imaging Scientist (12 months fixed-term position. Deadline 18th Nov.) recruitment.crg.eu/content/job

If you have any questions don’t hesitate to reach out.

Boosts appreciated.

#getfedihired #fedihire #jobSearch #jobposting #Microscopy #Optics #ImageAnalysis

2025-10-24

Position open: Head of the Center for Microscopy and Image Analysis (Core Facility) at the Center for Microscopy and Image Analysis (ZMB) in the University of Zurich, Switzerland.

nature.com/naturecareers/job/1

#microscopy #PhDJobs #academia #ElectronMicroscopy #LightMicroscopy #ImageAnalysis

2025-10-22

Last week to subscribe for our FREE Webinar Series on "Mastering Colocalization Analysis"; from raw image to scientific results in minutes. Reserve your seat now!
svi.nl/webinarinvitation
#imaging #microscopy #cellbiology #fluorescence #imageanalysis #colocalization

2025-10-15

Today our team member Anna Breger tells her story - “Many little twists and turns have brought me to where I am now and I am absolutely thrilled about my interdisciplinary research project working on image analysis and historical music manuscripts.”

➡️ Find her full story at hermathsstory.eu/anna-breger/

#AppliedMathematics #ImageAnalysis #Music #InterdisciplinaryResearch #NonTraditionalPathways #DataScience #HerMathsStory

Alt text for picture: The picture shows the Her Maths Story logo on top, below is a portrait photo of Anna Breger. She’s wearing a dark blue shirt and a violin in her hands. She has long dark hair. The background is dark and her left side is covered by shade. Below the picture it says her name and Assistant Research Professor.
Galaxy-Team der Uni Freiburggalaxyfreiburg@bawü.social
2025-10-14
2025-10-11

version 0.7-0 of my R package `bayesImageS' is now available on CRAN for Linux and macOS
(Windows binaries are still being built and should be available soon)

The main change is a reduction in the console output for the exchange algorithm. There were also some minor changes to fix WARN and NOTE due to compatibility issues with the latest RcppArmadillo, which now uses the
Armadillo 15 linear algebra library by default.

cran.r-project.org/package=bay

#rstats #bayesian #ImageAnalysis

announcement by CRANberries of the new version of the R package bayesImageSlogo of the R package bayesImageS
2025-09-23

Tìm kiếm AI phân tích hình ảnh chạy trên Mac Mini M4? Thử các mô hình đa phương thức như Gemma 3 nhưng gặp lỗi? Cần gợi ý mô hình tối ưu cho Apple Silicon và Neural Engine. #AI #ImageAnalysis #MacM4 #TríTuệNhânTạo #PhânTíchẢnh

reddit.com/r/LocalLLaMA/commen

2025-08-25

Transformer-Ensemble-Based Implicit Spectral–Spatial Functions for Arbitrary-Resolution Hyperspectral Pansharpening.
IEEE Transactions on Geoscience and Remote Sensing, vol. 63, pp. 1-19, 2025, Art no. 5519519
doi.org/10.1109/TGRS.2025.3589
#ai #transformers #imageanalysis
bsky bsky.app/profile/clirspec.org

2025-08-20

Sept 25: Learn to track objects over time and instances. With Carsten Rother (@uniheidelberg).

Register for the series 👉 bit.ly/6-image-processing-tasks

@helmholtz
#imaging #Tracking #ImageAnalysis

PPC Landppcland
2025-08-19

Google URL context tool now supports PDF analysis and scaled production use: Google's URL context tool for Gemini API reaches production scale with PDF support, image analysis, and expanded content types for developers. ppc.land/google-url-context-to

Bruno C. Vellutinibruvellu@biologists.social
2025-08-04

Last week to apply to the Light-Sheet Image Analysis Workshop.

A five-day practical course on the processing and analysis of light-sheet microscopy imaging data. It will take place in Santiago, Chile, from January 5–9, 2026.

Deadline: August 8.

Learn more and apply here: lightsheetchile.cl/light-sheet

#Microscopy #Lightsheet #ImageProcessing #ImageAnalysis #LatinAmerica #GlobalSouth

Poster of the Light-Sheet Image Analysis Workshop (Santiago, Chile) from January 5-9, 2026. Application deadline: August 8.

CENTER FOR INTEGRATIVE BIOLOGY
UNIVERSIDAD MAYOR

Designed for researchers at all career levels and microscopy technicians seeking training in light sheet microscopy and multidimensional image processing.

- Introduction to lightsheet microscopy and 3D visualization
- Fundamentals of image analysis
- Machine Learning and Al for image analysis
- Working on a project using your own images or provided

Organizers:
- Anibal Vargas Rios, PhD, LiSIUM-Chile Initiative Coordinator
- Luz Fuentealba, PhD, Microscopy Unit U. Mayor Coordinator

Co-organizers and instructors:
- Marina Cuenca, PhD
- Agustin Corbat, PhD
- Bruno Vellutini, PhD

In-person Workshop will be in Universidad Mayor, Campus Huechuraba

www.lightsheetchile.cl
2025-07-23

AI: Explainable Enough

They look really juicy, she said. I was sitting in a small room with a faint chemical smell, doing one my first customer interviews. There is a sweet spot between going too deep and asserting a position. Good AI has to be just explainable enough to satisfy the user without overwhelming them with information. Luckily, I wasn’t new to the problem. 

Nuthatcher atop Persimmons (ca. 1910) by Ohara Koson. Original from The Clark Art Institute. Digitally enhanced by rawpixel.

Coming from a microscopy and bio background with a strong inclination towards image analysis I had picked up deep learning as a way to be lazy in lab. Why bother figuring out features of interest when you can have a computer do it for you, was my angle. The issue was that in 2015 no biologist would accept any kind of deep learning analysis and definitely not if you couldn’t explain the details. 

What the domain expert user doesn’t want:
– How a convolutional neural network works. Confidence scores, loss, AUC, are all meaningless to a biologist and also to a doctor. 

What the domain expert desires: 
– Help at the lowest level of detail that they care about. 
– AI identifies features A, B, C, and that when you see A, B, & C it is likely to be disease X. 

Most users don’t care how a deep learning really works. So, if you start giving them details like the IoU score of the object detection bounding box or if it was YOLO or R-CNN that you used their eyes will glaze over and you will never get a customer. Draw a bounding box, heat map, or outline, with the predicted label and stop there. It’s also bad to go to the other extreme. If the AI just states the diagnosis for the whole image then the AI might be right, but the user does not get to participate in the process. Not to mention regulatory risk goes way up.

This applies beyong images, consider LLMs. No one with any expertise likes a black box. Today, why do LLMs generate code instead of directly doing the thing that the programmer is asking them to do? It’s because the programmer wants to ensure that the code “works” and they have the expertise to figure out if and when it goes wrong. It’s the same reason that vibe coding is great for prototyping but not for production and why frequent readers can spot AI patterns, ahem,  easily.  So in a Betty Crocker cake mix kind of way, let the user add the egg. 

Building explainable-enough AI takes immense effort. It actually is easier to train AI to diagnose the whole image or to give details. Generating high-quality data at that just right level is very difficult and expensive. However, do it right and the effort pays off. The outcome is an AI-Human causal prediction machine. Where the causes, i.e. the median level features, inform the user and build confidence towards the final outcome. The deep learning part is still a black box but the user doesn’t mind because you aid their thinking. 

I’m excited by some new developments like REX which sort of retro-fit causality onto usual deep learning models. With improvements in performance user preferences for detail may change, but I suspect that need for AI to be explainable enough will remain. Perhaps we will even have custom labels like ‘juicy’.

#AI #AIAdoption #AICommunication #AIExplainability #AIForDoctors #AIInHealthcare #AIInTheWild #AIProductDesign #AIUX #artificialIntelligence #BettyCrockerThinking #BiomedicalAI #Business #CausalAI #DataProductDesign #DeepLearning #ExplainableAI #HumanAIInteraction #ImageAnalysis #LLMs #MachineLearning #StartupLessons #statistics #TechMetaphors #techPhilosophy #TrustInAI #UserCenteredAI #XAI

Fabrizio Musacchiopixeltracker@sigmoid.social
2025-07-13

To wrap this up: Both tools are easy to test. I highly recommend trying them on your own data to see what works best for your use case.

I’ll include #CellSeg3D in our next #Napari #bioimage analysis course (fabriziomusacchio.com/teaching). Curious what impressions and feedback the students will share. 🧪🔍

What I really like about @napari is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for (bio) #imageanalysis! 👌

2025-07-11

👏 Big congrats to Annika Reinke for winning the Hector Foundation Prize 2025 for Metrics Reloaded, setting new standards for AI in image analysis.

Learn more, explore the tool & meet all awardees in a video 👉 helmholtz-imaging.de/news/hect

#helmholtz #helmholtzimaging #imaging #metrics #metricsreloaded #AI #imageanalysis

@association @DKFZ

2025-06-27

Day 3 at #HIconference2025 wrapped with exciting talks on #AI for #imageanalysis, data integration & moonshot projects.

A big thank you to all speakers, chairs & participants!

See you next year!

#HelmholtzImaging #imaging #Helmholtz

Helmholtz Imaging Conference 2025Helmholtz Imaging Conference 2025Helmholtz Imaging Conference 2025Helmholtz Imaging Conference 2025
2025-05-17

Just wanted to give a shoutout to prof. Tiago Olivoto and his #R pkg 📦 (tiagoolivoto.github.io/pliman/)

Really nice for plant image analyis :)
Give it a try #ImageAnalysis #PlantScience #LeafAnalysis

2025-04-28

Image analysts: What is your go to method for batch converting image files from the proprietary format to a tiff file? If this should be done at all...

I’ve been using FIJI to open and re-save mine. Although this gives me another look at the image as a QC step, I am using Napari more and more and have found a tiff easier to load into Python.

#Microscopy #ImageAnalysis #Napari #FIJI

2025-04-21

TechCrunch: The latest viral ChatGPT trend is doing ‘reverse location search’ from photos . “This week, OpenAI released its newest AI models, o3 and o4-mini, both of which can uniquely ‘reason’ through uploaded images. … These image-analyzing capabilities, paired with the models’ ability to search the web, make for a potent location-finding tool. Users on X quickly discovered that o3, […]

https://rbfirehose.com/2025/04/21/techcrunch-the-latest-viral-chatgpt-trend-is-doing-reverse-location-search-from-photos/

Client Info

Server: https://mastodon.social
Version: 2025.07
Repository: https://github.com/cyevgeniy/lmst