#SingleCellAnalysis

2024-12-11

Four years after publishing my work on machine-driven parameter screen of biochemical reactions, it still has zero citations. That makes me sad; I am really proud of this work. So I asked ChatGPT to suggest me hashtags, for another chance to reach readers. academic.oup.com/nar/article/4 #MolecularBiology #BiochemicalReactions #ReverseTranscription #RNASequencing #LabAutomation #GeneExpression #SingleCellAnalysis #HighThroughput #AIinScience #ComputationalBiology #BiotechInnovation #DataDrivenResearch

2024-10-03

Do you know gget by the Pachter lab? You should! It now includes efficient querying of Bgee in Python. Get high quality curated gene expression data directly in Python or command line. pachterlab.github.io/gget/en/b #RNAseq #biocuration #Python #scRNAseq @SIB @marcrr @fbastian @dee_unil

#bgee #Bioinformatics #RNASequencing #SingleCellRNASeq #Genomics #Transcriptomics #GeneExpression #ComputationalBiology #SingleCellAnalysis #GeneExpressionAnalysis

Spring ScienceSpringScience
2024-05-06

It's and we're back with more in our "AI Embeddings" series!

What can you do with embeddings?

The Spring Engine is powered by data, and single cell embeddings unlock the power and speed of PhenoFinder - our tool that performs unsupervised clustering of single-cell data.

Are you interested in surfacing novel phenotypes in your data, but can't spend days and days examining images by eye? (๐Ÿงต )

Lukas VFN ๐Ÿ‡ช๐Ÿ‡บanimalculum@scholar.social
2024-01-09

New research on #microbes expands the known limits for life on Earth and beyond phys.org/news/2024-01-microbes

#SingleCellAnalysis in #hypersaline brines predicts a water-activity limit of #microbial anabolic activity science.org/doi/10.1126/sciadv

"the research shows how increasing #salinity changes microbial community composition, rates of #metabolism. These can impact nutrient cycling, as well as the lives of #crustaceans & #insects, which are essential food sources for migratory #birds, other #animals"

Researchers collecting samples from a body of water.
2023-02-09

Anybody know about anything cool happening in #FlowCytometry lately? I want to hear some neat stuff about #SingleCellAnalysis

2022-11-19

Hey #rstats folks, do you think it's OK to use arithmetic mean to characterise (zero inflated) count data? Apparently it's the de facto standard in #SingleCellAnalysis #transcriptomics, but I'm not the only one who thinks it's dodgy github.com/satijalab/seurat/is #Seurat

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