Four years after publishing my work on machine-driven parameter screen of biochemical reactions, it still has zero citations. That makes me sad; I am really proud of this work. So I asked ChatGPT to suggest me hashtags, for another chance to reach readers. https://academic.oup.com/nar/article/48/7/e37/5728495 #MolecularBiology #BiochemicalReactions #ReverseTranscription #RNASequencing #LabAutomation #GeneExpression #SingleCellAnalysis #HighThroughput #AIinScience #ComputationalBiology #BiotechInnovation #DataDrivenResearch

Coming to #biocuration2025? Join our workshop scFAIR: FAIRification of single-cell data https://www.stowers.org/events/biocuration2025 @SIB @biocurator @marcrr @fbastian
#scRNAseq #FAIR #biocuration #bgee #FAIRdata #FAIRification #scFAIR #SingleCellAnalysis https://sc-fair.org/

Do you know gget by the Pachter lab? You should! It now includes efficient querying of Bgee in Python. Get high quality curated gene expression data directly in Python or command line. https://pachterlab.github.io/gget/en/bgee.html #RNAseq #biocuration #Python #scRNAseq @SIB @marcrr @fbastian @dee_unil

#bgee #Bioinformatics #RNASequencing #SingleCellRNASeq #Genomics #Transcriptomics #GeneExpression #ComputationalBiology #SingleCellAnalysis #GeneExpressionAnalysis

It's #machinelearningmonday and we're back with more in our "AI Embeddings" series!

What can you do with #singlecell embeddings?

The Spring Engine is powered by #singlecellanalysis data, and single cell embeddings unlock the power and speed of PhenoFinder - our tool that performs unsupervised clustering of single-cell data.

Are you interested in surfacing novel phenotypes in your data, but can't spend days and days examining images by eye? (🧵 )

New research on #microbes expands the known limits for life on Earth and beyond https://phys.org/news/2024-01-microbes-limits-life-earth.html

#SingleCellAnalysis in #hypersaline brines predicts a water-activity limit of #microbial anabolic activity https://www.science.org/doi/10.1126/sciadv.adj3594

"the research shows how increasing #salinity changes microbial community composition, rates of #metabolism. These can impact nutrient cycling, as well as the lives of #crustaceans & #insects, which are essential food sources for migratory #birds, other #animals"

Anybody know about anything cool happening in #FlowCytometry lately? I want to hear some neat stuff about #SingleCellAnalysis

Hey #rstats folks, do you think it's OK to use arithmetic mean to characterise (zero inflated) count data? Apparently it's the de facto standard in #SingleCellAnalysis #transcriptomics, but I'm not the only one who thinks it's dodgy https://github.com/satijalab/seurat/issues/5542 #Seurat