"Scalable image-based visualization and alignment of spatial transcriptomics datasets", by Preibisch et al. 2025 @preibischs
https://www.sciencedirect.com/science/article/pii/S2405471225000973
#transcriptomics #BioimageInformatics

🔬✨Zooming In—One Cell at a Time!

The 5th Danish #Single-Cell #Symposium is coming to #Copenhagen, and it's THE place to be if you’re into all things single-cell!

Topics will include:
Advances in single-cell #genomics and #transcriptomics
#Computational approaches to #dataanalysis
Applications in health and disease

🗓️May 15–16
📍Hosted at Panum, UCPH
💡Scientists, students, and techies are all welcome!

🔗 Check it out: https://events.au.dk/5thdanishsingle-cellsymposium

#SingleCell #ScienceInCopenhagen #LifeScience

SciTech Chronicles. . . . . . . . .April 2nd, 2025

https://bit.ly/stc040225

#brain #genes #hypothalamus #transcriptomics #duckweed #Stomata #protein #starch #autonomous #robots #Lely #traffic #Caribbean #Belize #sediment #core #Canaan #amulets #seals #Dung

Landscape #transcriptomics may give insight into what #stresses wild #bees.

#RNA #conservation #AI #genomics #conservation #bumblebees #Bombus #funded_by_USDA #funded_by_us

https://phys.org/news/2025-03-landscape-transcriptomics-insight-stresses-wild.html

Last time teaching Applied Plant Transcriptomics at TU Braunschweig 🌱🧬
Slides & resources: https://github.com/bpucker/AppliedPlantTranscriptomics
#Bioinformatics #Transcriptomics
@PuckerLab

Pipeline release! nf-core/molkart v1.1.0 - 1.1.0 - Resolution Road!

Please see the changelog: https://github.com/nf-core/molkart/releases/tag/1.1.0

#fish #imageprocessing #imaging #molecularcartography #segmentation #singlecell #spatial #transcriptomics #nfcore #openscience #nextflow #bioinformatics

Key #genes for #corn #architecture revealed, identifying future #breeding targets.

#agriculture #food-security #genomics #gene_regulation #pleiotropy #transcription_factors #transcriptomics #funded_by_NSF #funded_by_us

https://phys.org/news/2025-03-key-genes-corn-architecture-revealed.html

The #eye is famously a well-accessible extension of the brain. So why not looking into eyes to find out about brain disorders? For #schizophrenia this may become possible as retinal cells are affected. #genomics #transcriptomics https://jamanetwork.com/journals/jamapsychiatry/fullarticle/2829092

📰 Aujourd'hui, Gwenaelle nous partage l'histoire des technologies de transcriptomique : comment faisait-on avant l'ère bénie du séquençage haut débit 🤔
https://bioinfo-fr.net/expression-de-gene-evolution
#bioinfofr #transcriptomics

Interesting opportunity!
A permanent position as an Associate Professor in #Zoology is available
at the #NaturalHistoryMuseum #University of Oslo. #MuseumJobs #EvolutionaryBiology, #comparativegenomics #Transcriptomics #Systematics #populationgenomics

https://www.jobbnorge.no/en/available-jobs/job/268410/associate-professor-in-zoology

deadline February 23rd 2025

A genetic barcoding system lets scientists tag and track cells, making it easier than ever to map gene expression (#transcriptomics) and decode behaviour.
https://elifesciences.org/reviewed-preprints/88334?utm_source=mastodon&utm_medium=social&utm_campaign=organic

Last days to apply!

We are recruiting #PhD 🎓 students! We use functional #genomics and #StructuralBiology to study gene expression 🧬 -> :rna: and we have open #PhDpositions!

🧬 :protein: :rna: 🧪 🧫 🔬 🥼 🎓

The #PhDprogram application deadline is January 14, 2025.

#transcription #bioinformatics #cryoem #transcriptomics #ScienceMastodon #AcademicMastodon #PhDstudent #mpinat

Application link: https://uni-goettingen.de/de/application/556704.html

new paper: "A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease" https://doi.org/10.1038/s41598-025-85580-4

"our study shows that collaborative network analysis approaches are well-suited to study rare diseases, as they provide hypotheses for pathogenic mechanisms from multiple perspectives."

#bioinformatics #huntingtons #transcriptomics #rareDisease

Casey Brown was a great scientist and an amazing person. He could always make time to catch up with junior people, give encouragement or just joke about pretty much everything.

Now in his honour some of the leading scientist in #genomics and #complextraits have joint to record the Casey Brown #lectures.

From the basics of human #genetics, to #transcriptomics #epigenetics or #machinelearning for genomics. All free to watch.

https://m.youtube.com/playlist?list=PLlV97eYP56rATGyRK4SSHVXyJjVxPGth_

Cancer cells may change their mechanical properties and thus become able to invade other tissues, i.e. to metastasize. This paper identifies a small network of key genes that tune cell mechanics. https://elifesciences.org/reviewed-preprints/87930 #machinelearning #transcriptomics #cancer

Greetings to i3L students and all life sciences enthusiasts!

i3L proudly presents another episode of Power Talk!

Special in December 2024 Power Talk, i3L proudly invites an expert: Rizky Nurdiansyah .,M.Si (PhD Candidate at Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT))

Register Here: link : https://lnkd.in/gVxJ7v5c

We're looking forward to seeing you! 🙏 🙏 🙏
metagenomics #i3L #biotechnology #biomedicine #genomics #transcriptomics

Open-ST: High-resolution spatial transcriptomics in 3D #spatial #transcriptomics #python #newtool
https://www.sciencedirect.com/science/article/pii/S0092867424006366

I am very happy to announce that our work on hemichordate gene expression and chromatin accessibility dynamics is now published on Nature Ecology and Evolution! https://www.nature.com/articles/s41559-024-02562-x

#science #genomics #evolution #deuterostomes #transcriptomics #chromatin #grn #nature #evodevo #development #developmentalbiology #biology

Do you know gget by the Pachter lab? You should! It now includes efficient querying of Bgee in Python. Get high quality curated gene expression data directly in Python or command line. https://pachterlab.github.io/gget/en/bgee.html #RNAseq #biocuration #Python #scRNAseq @SIB @marcrr @fbastian @dee_unil

#bgee #Bioinformatics #RNASequencing #SingleCellRNASeq #Genomics #Transcriptomics #GeneExpression #ComputationalBiology #SingleCellAnalysis #GeneExpressionAnalysis

Surprising #hormone-related #gene activity discovered in the early #larval stage of the Malabar #grouper.

#Epinephelus #metamorphosis #transcriptomics

https://phys.org/news/2024-09-hormone-gene-early-larval-stage.html