SatuTe by Manuel et al. is a new tool to quantify phylogenetic signal and saturation between subtrees. Applied to the Tree of Life, SatuTe shows that most ribosomal proteins support a eukaryotic clade.
π doi.org/10.1093/molbev/msaf090
#CompBio
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#tutorintellect #computationalbiologyhomeworkhelp #compbio #computationalbiologyassignmenthelp #computationalbiologyandchemistry #bioinformaticsandcomputationalbiology #computationalsystemsbiology #computationalbiologytutoringhelp
The more I learn about #statistics, the more I understand that:
1. I don't fully understand what experimental design means in theory or practice aside from a culture of tradition and learning by example
2. common #compBio techniques like generalized linear models have such a technical depth we rarely understand, which leads to us misunderstand/misinterpret our results
3. there are many ways to do the same thing, but each have nuanced trade-offs that are difficult to express without simulations
CausalXtract, a flexible pipeline to extract causal effects from live-cell time-lapse imaging data. #CompBio
https://elifesciences.org/articles/95485?utm_source=mastodon&utm_medium=social&utm_campaign=organic
Postdoc in computational genomics - Farabella Lab
Istituto Italiano di Tecnologia
????JOB OPENING????
We are hiring #postdoc #compbio #MathBio #bioinfo!
For more info, feel free to DM or visit https://farabellalab.org.
See the full job description on jobRxiv: https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-...
https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=84618
I'm officially going to be attending #NeurIPS2024 in December! I signed up too late to give a presentation, but I'd love to meet any #statistics, #compBio, and #causalInference people who are attending.
I'm particularly interested in the Causality and Large Models workshop (https://calm-workshop-2024.github.io/) and am looking forward to all the talks.
Evento prΓ³ximo y con registro gratuito. Las anteriores ediciones han sido realmente enriquecedoras
See You there if interest
#phil #compsci #philsci #compBio #computerscience #computer_history #hist #history #histsci #philosophy #biol #biology #cogsci #cognitivescience #mind #mindscience
Postdoc in computational genomics - Farabella Lab
Istituto Italiano di Tecnologia
????JOB OPENING????
We are hiring #postdoc #compbio #MathBio #bioinfo!
For more info, feel free to DM or visit https://farabellalab.org.
See the full job description on jobRxiv: https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-...
https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=81808
Getting structurally homogenous spatial samples is often challenging.
We developed a method to map the spatial context of cells between heterogenous samples gaining insights into development and patient sub-populations!
π¦ Just released π¦
ππππππ-π§.π.π.π
https://github.com/seqan/lambda/releases/tag/lambda-v3.1.0
which will probably be the last (feature) release.
Postdoc in computational genomics - Farabella Lab
Istituto Italiano di Tecnologia
????JOB OPENING????
We are hiring #postdoc #compbio #MathBio #bioinfo!
For more info, feel free to DM or visit https://farabellalab.org.
See the full job description on jobRxiv: https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-...
https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=78266
A paper I'm an author on has finally been published! Congrats to all the authors, especially the 3 co-leads.
https://www.nature.com/articles/s41588-024-01826-3
How structural variants affect the 3D chromatin structure in metastatic castration-resistant prostate cancer and facilitate a bunch of biologically interesting interactions in the nucleus is really interesting, especially how that affects gene expression and disease progression.
Please take a look!
#prostateCancer #bioinformatics #compBio #genomics #3Dgenome
Postdoc in computational genomics - Farabella Lab
Istituto Italiano di Tecnologia
????JOB OPENING????
We are hiring #postdoc #compbio #MathBio #bioinfo!
For more info, feel free to DM or visit https://farabellalab.org.
See the full job description on jobRxiv: https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-...
https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=77188
I've had some time off from work recently, which has given me the space to think about about my career in computational biology and how I try to be successful in it.
This blog post was inspired by a colleague that asked the simple question: what kind of tools and resources do you feel you need to access for success as a computational biologist?
https://jrhawley.ca/2024/06/22/resources-for-successful-comp-bio
#science #academicChatter #compBio #computationalBiology #bioinformatics #careers
We need recipes for common bioinformatics tasks π§¬π§βπ³ New post on the blog https://bionics.it/posts/bioinformatics-recipes #bioinformatics #compbio
This is spot on. Like all parts of experiments, the people and the tasks to be done should not be left as an afterthought.
https://www.huber.embl.de/group/posts/compbioisnotcheap.html
Postdoctoral Position in Mathematical and Computational Biology/Biophysics
J. Heyrovsky Institute of Physical Chemistry, Czech Academy of Sciences
Hiring a #MathBio / #CompBio / #Biophysics / #AppliedMath postdoctoral fellow to work on #enzyme assembly modeling @JHINST_Prague!
See the full job descri...
https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics-2/?feed_id=75011
Wonderful kick-start of the EACR Cancer Multiomics conference in Bergamo today! Learnt lots of things, saw some very cool science, and it was cool that our proposal for an IDD platform at the Integrated Pathology Unit garnered so much interest!
Check out my blog entry and poster here:
https://ferranc96.github.io/posts/EACRpposterIDD/
Postdoctoral Position in Mathematical and Computational Biology/Biophysics
J. Heyrovsky Institute of Physical Chemistry, Czech Academy of Sciences
Hiring a #MathBio / #CompBio / #Biophysics / #AppliedMath postdoctoral fellow to work on #enzyme assembly modeling @JHINST_Prague!
See the full job descri...
https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics-2/?feed_id=74822
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