I’m looking for databases similar to #TAIR but for #plants that aren’t #arabidopsis. Or rather, I want to understand what some set of “standard annotations” are - what would be the go-to annotation for a given plant species? Any recommendations? Had a look at #GDR #GenomeDatabaseForRosaceae but couldn’t get my head around which of these are considered standard to use. Mostly interested in #protein sequences.

#GenomeAnnotation #genomics #PlantGenomics

Seems like it's time for a new #introduction! I've just started a postdoc with Colin Olito and Bengt Hansson at #LundUniversity. I'll be working with #SexChromosome #evolution in Wikstroemia, doing #genomics, #GenomeAnnotation, and other #bioinformatics things related to that. I'm an avid #tidyverse and #RStats user, but with a ton of #python background. I did my PhD on #oat genomics with #ScanOats. I'm really into #visualization, and I want to learn more about statistical modelling.

Looking forward to PAG in January! We will bring exciting news about BRAKER with different types and amounts of extrinsic evidence 😀 #genomeannotation #bioinformatics

Oh, and obviously I've done a ton of work on #oats and #GenomeAnnotation and #GeneMapping, and looked at at bunch of different types of data from #PlantGenomes - this ended up in a Nature publication on the oat genome with me as one of the first authors: https://www.nature.com/articles/s41586-022-04732-y. #GenomicPrediction and #PlantBreeding are things I'm interested in. I've also dabbled in #DeepLearning, mainly #ConvNets for protein contact prediction and image segmentation.

#JBrowse2 has been a long time coming - seven years in development, ten if you count the first rumblings from Rob Buels. The payoff is an amazingly versatile, fast, and beautiful suite of programs for visualizing general genome annotations, relationships between genomes, and genomic evidence: https://rdcu.be/c98wf

#JBrowse #GenomeBrowser #Genomics #Bioinformatics #GenomeAnnotation #Genome #Genomes

Latest #ArabidopsisV12 news: Automated annotation pipeline has begun at NCBI. Looking forward to reviewing the initial results by the end of March. #CommunityProject #GenomeAnnotation #GeneStructure

@gtn Thanks to funding from Erasmus+, we'll be supporting this event with tutorials covering #GenomeAnnotation, #Oncology, #Transcriptomics, and #DataScience!

The GTN Smörgåsbord 3 is happening soon! Join us for a free week of online #UseGalaxy #bioinformatics training at your own pace, on your own schedule!

Captioned video tutorials, or plain text, will guide you through an introduction to @galaxyproject, #proteomics, #transcriptomics, #GenomeAnnotation #covid19, #MachineLearning, #genomics and more!

Last year was a smashing success with 3,300 registrations, let's see if we can do better!

📅 May 22-26, 2023
➡️ https://gxy.io/smorgasbord3

Hi #bioinformatics community! What would you recommend as a good gff/gtf validator? Subsidiary question: what are the criteria for a good gtf/gff validator? #gff #gtf #GenomeAnnotation