Lmst

Researchers use partitioned local depth (PaLD) to search for patterns within time series transcriptome data

https://academic.oup.com/insilicoplants/article/6/1/diad018/7381013
#Arabidopsis #GRN #PlantScience

RE: https://mstdn.social/@rtvnoord/115555434872019113

En het was leuk! #GRN

New algorithm address the challenge of inferring GRNs from time series transcriptome data. This approach generates cohesive networks with minimal user input, revealing biologically meaningful neighborhoods.
https://doi.org/10.1093/insilicoplants/diad018 #PlantBiology #Transcriptomics #GRN

Besichtigung Vereinswald
Liebe Waldfreund:innen,

mit großer Begeisterung möchten wir von unserem kürzlichen Besuch in unserem zweiten Vereinswald in Westbrandenburg berichten! Es zwar ein kurzer Tag vor Ort in der Natur, aber Gemeinschaft konnte gepflegt werden und ein wenig Müll für unseren Planeten an einen besseren Ort gebracht werden.

https://www.berliner-waldfreunde.de/2025/07/19/besichtigung-vereinswald/
#Allgemein #Brandenburg #feder #glas #grn #mll #sturm #Wald

Gene regulatory network analysis pointed to NFIB as a central hub. It interacts with MEIS2 and TCF4, and drives late-stage enhancer activation. Heterochronic transplants confirmed: maturation competence is sensitive to environmental timing.

#NewsMayerlab #GRN #GeneRegulation #GeneRegulatoryNetwork #Scenic+ #NFIB #Transplantation

(6/7)

Most #biosynthetic gene clusters remain uncharacterized. @marnixmedema @gillesvanwezel &co integrate #GRN analysis & global expression data to identify desJGH as an operon essential for #biosynthesis of #desferrioxamineB in Streptomyces @PLOSBiology https://plos.io/43UVUPB

Left: Predicted gene regulatory network of Streptomyces coelicolor based on 17 well-known regulators. Each node in the network represents a (regulatory) gene, and every edge represents a PWM predicted regulatory interaction between nodes. The edges colored in dark gray indicate strong PWM prediction scores, while the lighter gray shades represent weaker interactions. Matches within BGC regions are depicted as triangles. In six regions (black circled), the matches fall within a co-expressed region, highlighting their functional relation to these compounds. Right: Proposed biosynthetic pathway for assembly of desferrioxamines E and B. Main biosynthetic enzymes presented in bold face. DesG and DesH balance intracellular N-hydroxy-N-succinylcadaverine (HSC) and N-hydroxy-N-acetylcadaverine (HAC) concentrations by converting HSC to HAC. In the absence of DesG and/or DesH, the cells likely fail to produce sufficient levels of HAC, thereby strongly attenuating the production of DFOB. Although DesC has been shown to be able to catalyze the acetylation of N-hydroxycadaverine in vitro, the enzyme can only modestly compensate for the loss of DesH in vivo, underlining the important role played by DesG and DesH in DFOB production.

🍃 Comparative analysis of #GRN identifies conserved regulators in seed plants
by Donat Wulf, Andrea Bräutigam
https://doi.org/phrb #GRN #PlantScience

🌿 A partitioned local depth algroithm reveals community structure using time series transcriptome datasets
https://doi.org/phq4 #GRN #PlantScience

Is My Blue Your Blue?
Wer nicht gerade von Blau- oder Grünblindheit betroffen ist kann eigentlich ganz gut sagen, was Blau und was Grün ist. Aber ab einem bestimmten Punkt wird es schwierig; ist das noch Cyan oder schon türkis? Testet Eurer Farbensehen auf der Seite "Is My Blue Your Blue?" und schaut, ob ihr zum Durchschnitt gehört, oder voll daneben liegt.
https://labelizer.de/is-my-blue-your-blue/
#Grafik #Blau #Farben #Farbenraten #Grn

💻 🌿 A partitioned local depth algroithm reveals community structure using time series transcriptome datasets
by Maleana G Khoury, Kenneth S Berenhaut, Katherine E Moore, Edward E Allen, Alexandria F Harkey, Joëlle K Mühlemann, Courtney N Craven, Jiayi Xu, Suchi S Jain, David J John, James L Norris, Gloria K Muday
https://doi.org/10.1093/insilicoplants/diad018 #GRN #PlantScience 🧪

🔬✨ Interested in improving research transparency & reproducibility? Join the Meta-Science Summer School to design & launch a meta-research study!
➡️ Co-organized by the @GermanRepro
👥 Participants will learn about meta-research by designing and collecting data for a meta-research study in a small team
📅 Date: 15 - 20 June 2025; Apply by March 21, 2025!
🔗 More info: https://www.bihealth.org/en/notices/meta-science-summer-school-designing-and-conducting-studies-to-improve-research
🌐 Language: English
📌 Location: Frankfurt, Germany
#OpenScience #Reproducibility #MetaResearch #GRN (lmf)

Invitation to the Meta-Science Summer School and logos of affiliated and organizing institutions: Berlin Institute of Health (BIH), the German Reproducibility Network (GRN), the META REP Priority Program, iRise and the University of Coimbra EXCELScIOR project ERA chair.

💻 🍃 Comparative analysis of #GRN identifies conserved regulators in seed plants
by Donat Wulf, Andrea Bräutigam
https://doi.org/10.1093/insilicoplants/diae013 #GRN #PlantScience 🧪

Heel leuke gesprekken, mooie optredens, het was een feestje.
#GRN

#Sondaggi #NuovaZelanda
Sondaggio di Taxpayers' Union/Curia:

Data rilevazione: 6-10 novembre
+/-: 3-7 ottobre

Intervistati: 1000

@OsservatorioEsteri

➡️mushroom exhibition Botanical garden Rostock 🖼️⬅️

🔗 Permalink:
https://luftspiel.de/2024/09/29/mushroom-exhibition-botanical-garden-rostock-%f0%9f%96%bc%ef%b8%8f/

🖼 means gallery :)

#Europe #Nature #PhotoGalleries #Ausstellung #Botanic #Botanicalgarden #BotanischerGarten #exhibition #grn #mushroom #Pilz #pilze #Rostock

💚

Stimmen aus dem Rh/N-Dreieck

Judith #Masuch, Geschäftsführerin der #GRN gGmbH, zur Schließung der #Notfallpraxen in #Schwetzingen und #Eberbach:

https://phenixxenia.org/wiki/Stimmen_aus_dem_Rh/N-Dreieck_17.10.2024_B

I am very happy to announce that our work on hemichordate gene expression and chromatin accessibility dynamics is now published on Nature Ecology and Evolution! https://www.nature.com/articles/s41559-024-02562-x

#science #genomics #evolution #deuterostomes #transcriptomics #chromatin #grn #nature #evodevo #development #developmentalbiology #biology