Applying environmental DNA metabarcoding to calculate an index of biotic
integrity for freshwater fish
https://www.biorxiv.org/content/10.1101/2025.05.26.656190v1
#environmentalDNA #eDNA #metabarcoding #freshwater #fish #IndexOfBioticIntegrity
#Metabarcoding
Pipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.14.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
The distribution of genetic diversity in ecological communities: A unifying measure for monitoring biodiversity change
https://ecoevorxiv.org/repository/view/9169/
TLDR - CGD - distribution of nucleotide diversity values across all OTUs in a community sample
#CommunityGeneticDistribution #CGD #biodiversity #metabarcoding #OTU
Capture—Incubate—Release: An Animal-Friendly Approach to Assess Local Aquatic Macroinvertebrate Species Diversity Through Environmental DNA Metabarcoding
ParAquaSeq, a Database of Ecologically Annotated rRNA Sequences Covering Zoosporic Parasites Infecting Aquatic Primary Producers in Natural and Industrial Systems #eDNA #metabarcoding #protists https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.14099
ORDNA: Deep-learning-based ordination for raw environmental DNA samples #eDNA #metabarcoding https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.70033
eDNAjoint: An R package for interpreting paired or semi-paired environmental DNA and traditional survey data in a Bayesian framework #eDNA #metabarcoding https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.70000
We are excited to share our new promo video for the #BIOLAWEB project!
With narration by Srđan Miletić, this video showcases all the activities realised during the BIOLAWEB project thanks to the incredible team, colleagues, and students.
Happy to announce a new paper of my 0hd student Paula Gauvin:
An annotated reference library for supporting DNA metabarcoding analysis of aquatic macroinvertebrates in French freshwater environments
https://mbmg.pensoft.net/article/137772/
#metabarcoding #eDNA #reference #library @pensoft @mbmg
Pipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.13.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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