new paper: "Single-cell transcriptomics of acetaminophen-induced responses in human 2D and 3D liver microtissues" https://doi.org/10.1007/s00204-025-04296-6
"Here, we applied single cell RNA sequencing to characterize cellular responses to acetaminophen exposure in two distinct liver cell culture formats: two-dimensional monolayers (2D) and three-dimensional (3D) spheroids composed of primary human hepatocytes, Kupffer cells, and liver endothelial cells."
Are you interested in mastering #MachineLearning for biological data?
Join our online course Introduction to Machine Learning with R (16–20 Feb). Gain hands-on experience with R, tidymodels, & key ML techniques tailored for omics data analysis.
https://www.physalia-courses.org/courses-workshops/course43/
🚀 Master Statistical Methods for Metatranscriptomics
🗓️ 27–29 Apr | Online
Hands-on R/Bioconductor workshop on data normalization, differential expression, networks & multi-omics integration.
https://www.physalia-courses.org/courses-workshops/metatranscriptomics/
I have a paper on Biorxiv:
www.biorxiv.org/content/10.6...
My first preprint!
An instrument capablity comparison for #proteomics for #biomanufacturing. Working towards the economical appliction of #omics technologies to industrial life science.
From Discovery to Process Cont...
🖭 VIRE: A global data platform to better understand viruses
https://phys.org/news/2025-12-vire-global-platform-viruses.html
This year's @bioconductor Biological Data Science Summer School in Brixen, South Tyrol (the 22nd edition!) takes place 24-29 May 2026.
We cover (sc)-RNA-seq and #spatial #omics analysis, underlying (bio)statistical topics, #multiomics, #proteomics and #metabolomics, and also programmatic interaction from #Rstats :rstats: with LLMs, all very hands-on using R/Bioconductor tools.
https://csama2026.bioconductor.eu/
Registration opens on 1 Feb.
The #iCNS meeting continues with the presentation of Work Package 2 "Molecular human brain atlas". Interesting insights, into how to select the most relevant material to represent brain regions that are associated with psychiatric disorders and into how they can be studied using multi-omics.
https://i-cns.nl/en/research/work-packages
#Neuroscience #Brain #omics #multiomics
🎄 Türchen 14: Omics 🧬
Gene sind nur der Anfang – Proteine, Stoffwechsel & winzige Moleküle zeigen, was im Körper wirklich passiert. Omics betrachtet das große Zusammenspiel.
🎧 https://abc-der-genetik.podigee.io/18-omics
#ABCderGenetik #Omics #Genetik #Podcast
Is spatial transcriptomics data preprocessing giving you a headache? You're not alone! 🤯
Join our webinar designed for new researchers to simplify the complex world of image-based spatial omics. We'll walk through the practical workflow step-by-step, from initial cell segmentation to cleaning up your data.
Get the foundational skills you need. 📅 Sign up here: https://t1p.de/lqbg1
#Transcriptomics #SpatialTranscriptomics #Omics #DataScience #ResearchWebinar #GHGA #ELIXIR #deNBI
🔎 'Google for DNA' enables rapid full-text searches of vast genetic archives
https://medicalxpress.com/news/2025-10-google-dna-enables-rapid-full.html
#cs #computing #biology #omics #dna #biology #bioinformatics #algorithms #hardware #search
How do you train the next generation of open-science explorers? With Galaxy, collaboration, and a bit of computational magic.
https://training.galaxyproject.org/training-material/news/2025/07/17/gta-overview.html
@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #GalaxyTraining #OpenScience #Bioinformatics #DataScience #GTA2025 #EuroScienceGateway #ScienceEducation #ResearchTraining #FAIRData #MOOC #Training #CommunityScience #Omics #MachineLearning #Genomics #STEMtraining #FAIR (1/1)
The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/
@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch #GalaxyCommunity #SPOC (1/2)
The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/
@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch (1/2)
MetaGraph indexes and compresses vast collections of DNA, RNA, and protein sequences—representing petabases of data—and lets you query them instantly to turn big data into biological insight.
#research #medicine #science #biology #omics #bioinformatics
🧠 A molecular atlas of the hippocampus: Mapping RNAs and proteins at synaptic resolution
https://medicalxpress.com/news/2025-09-molecular-atlas-hippocampus-rnas-proteins.html
#brain #neuroscience #hippocampus #omics #instruments #molbio
🌾 Barley's mosaic origin traced to five wild populations and millennia of human involvement
https://phys.org/news/2025-09-barley-mosaic-wild-populations-millennia.html
#barley #food #plants #agriculture #farming #genomics #agronomy #omics #genetics
On Day 1 of European Galaxy Days, Paul Zierep presented Precision Diagnosis and Risk Stratification of Helicobacter pylori-Induced Gastritis Using Multi-Omics Machine Learning Signatures Or The Synergy Between Complex Research Projects and Galaxy.
#helicobacter #EGD2025 #galaxyproject #diagnosis #eosc #fair #omics #open_science
On Day 1 of European Galaxy Days, Marisa Loach presented The Single Cell and Spatial Omics Community.
Read more: https://galaxyproject.org/community/sig/singlecell/
@galaxyfreiburg
#community #EGD2025 #spatial_omics #galaxyproject #single_cell #eosc #fair #omics #open_science
