Pipeline release! nf-core/mag v4.0.0 - mag 4.0.0 - Blue Huemul!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/4.0.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Just wrapped up my talk at the University of Mainz on "Exploring the Specialized Metabolism of Plants with Long Read Sequencing" 🌿🔬 Great to share how nanopore sequencing helps decode complex plant pathways with ecological and biomedical potential. Thanks to the organizers and all who joined the discussion! #PlantScience #Genomics #LongReadSequencing #SpecializedMetabolism #UniversityOfMainz @PuckerLab

Our new paper has surfaced!
We took a deep dive into the bustling microbial metropolis of #LakeBalaton and used some fin-tastic technology to uncover its hidden secrets. Turns out, this lake is teeming with many tiny inhabitants!

So next time you're taking a dip in Lake Balaton, remember you're diving into a whole different kind of culture!

#LongReadSequencing
#Bacterioplankton
You can find more details in the paper:
https://doi.org/10.1038/s41598-025-96558-7

Pipeline release! nf-core/mag v3.4.0 - mag 3.4.0 - Green Gecko!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.1.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.3.1 - mag 3.3.1 - [2025-03-13]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.3.0 - mag 3.3.0 - Red Reindeer!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Today was a special day. #nanopore #LongReadSequencing

Excited to share the release of our Tropaeolum majus genome sequence and annotation:
https://doi.org/10.1101/2024.11.01.621629
#Genomics #LongReadSequencing

@PuckerLab @tubraunschweig

Pipeline release! nf-core/mag v3.2.1 - mag 3.2.1 [2024-10-30]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.2.0 - mag 3.2.0 - Salmon Salmon!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Students learned all steps of a plant genome project including planning, DNA extraction, nanopore sequencing, genome sequence assembly, gene prediction, functional annotation, data submission, and final presentation.
#Genomics #LongReadSequencing
(2/11)

@samnm and Benneth completed their work on the Ceratophyllum submersum plastome sequence. The phylogenetic tree shows the relationship of this aquatic plant to other plant species
https://doi.org/10.1186/s13104-023-06459-z
#Genomics #AquaticPlants #LongReadSequencing

Excited to share that Ronja just performed ONT sequencing run #100 in our lab. Read length distribution and output look great. Many thanks to Ronja and Katharina!
Read more about our genomics projects:
https://www.tu-braunschweig.de/en/ifp/pbb/research/genome-sequencing-projects
#LongReadSequencing #Genomics